HIV envelope polypeptides and vaccine

ABSTRACT

Oligonucleotide sequences encoding gp120 polypeptides from breakthrough isolates of vaccine trials using MN-rgp120 and the encoded gp120 polypeptides are provided. Use of the gp120 polypeptides from one or more of the isolates in a subunit vaccine, usually together with MN-rgp120, can provide protection against HIV strains that are sufficiently different from the vaccine strain (e.g.; MN-rgp120) that the vaccine does not confer protection against those strains. Antibodies induced by the polypeptides are also provided.

CROSS-REFERENCE TO RELATED APPLICATIONS

[0001] This application is a continuation-in-part of application Ser. No. 08/676,737, filed Jul. 8, 1996.

BACKGROUND OF THE INVENTION

[0002] 1. Field of the Invention

[0003] This invention relates to HIV envelope polypeptides and vaccines containing the polypeptides.

[0004] 2. Description of the Related Art

[0005] Acquired immunodeficiency syndrome (AIDS) is caused by a retrovirus identified as the human immunodeficiency virus (HIV). There have been intense efforts to develop a vaccine that induces a protective immune response based on induction of antibodies or cellular responses. Recent efforts have used subunit vaccines where an HIV protein, rather than attenuated or killed virus, is used as the immunogen in the vaccine for safety reasons. Subunit vaccines generally include gp120, the portion of the HIV envelope protein which is on the surface of the virus.

[0006] The HIV envelope protein has been extensively described, and the amino acid and nucleic acid sequences encoding HIV envelope from a number of HIV strains are known (Myers, G. et al., 1992. Human Retroviruses and AIDS. A compilation and analysis of nucleic acid and amino acid sequences. Los Alamos National Laboratory, Los Alamos, N. Mex.). The HIV envelope protein is a glycoprotein of about 160 kd (gp160) which is anchored in the membrane bilayer at its carboxyl terminal region. The N-terminal segment, gp120, protrudes into the aqueous environment surrounding the virion and the C-terminal segment, gp41, spans the membrane. Via a host-cell mediated process, gp160 is cleaved to form gp120 and the integral membrane protein gp41. As there is no covalent attachment between gp120 and gp41, free gp120 is sometimes released from the surface of virions and infected cells.

[0007] The gp120 molecule consists of a polypeptide core of 60,000 daltons which is extensively modified by N-linked glycosylation to increase the apparent molecular weight of the molecule to 120,000 daltons. The amino acid sequence of gp120 contains five relatively conserved domains interspersed with five hypervariable domains. The positions of the 18 cysteine residues in the gp120 primary sequence, and the positions of 13 of the approximately 24 N-linked glycosylation sites in the gp120 sequence are common to all gp120 sequences. The hypervariable domains contain extensive amino acid substitutions, insertions and deletions. Sequence variations in these domains result in up to 30% overall sequence variability between gp120 molecules from the various viral isolates. Despite this variation, all gp120 sequences preserve the ability of the virus to bind to the viral receptor CD4 and to interact with gp41 to induce fusion of the viral and host cell membranes.

[0008] gp120 has been the object of intensive investigation as a vaccine candidate for subunit vaccines, as the viral protein which is most likely to be accessible to immune attack. At present, clinical trials using gp120 MN strain are underway. However, to date no human vaccine trial has been of sufficient size to confirm or refute vaccine efficacy.

[0009] The development of candidate HIV-1 vaccines is burdened by the lack of in vivo or in vitro models of HIV-1 infection that accurately approximate the conditions of natural infection in humans. Several candidate HIV-1 vaccines [Berman et al.; J. Virol. 7:4464-9 (1992); Haigwood et al.; J. Virol. 66:172-82 (1992); Salmon-Ceron et al.; AIDS Res. and Human Retroviruses 11:1479-86 (1995)] have been described that elicit broadly cross-reactive antibodies able to neutralize a variety of diverse HIV-1 isolates in vitro. However, the relevance of in vitro assays to protective immunity in vivo is uncertain. Although several vaccines have provided chimpanzees with protection from challenge by homologous and heterologous strains of HIV-1, protection has not always correlated with in vitro neutralization assays carried out in T cell lines, or in lectin- and cytokine activated peripheral blood mononuclear cells (PBMCs) [Berman et al.; Nature 345:622-5 (1990); Bruck et al.; Vaccine 12(12):1141-8 (1994); El-Amad et al.; AIDS 9:1313-22 (1995); Girard et al.; J. Virol. 69:6239-48 (1995); and Fulz et al; Science 256:1687-1690 (1992)). While successful protection of chimpanzees is encouraging and has historically proved to be a reliable indicator of vaccine efficacy, the conditions of infection in all experimental models of HIV-1 infection differ significantly from natural infection in humans.

[0010] Experimental HIV-1 infection in vivo and in vitro both suffer from the limitation that the in vitro amplification of HIV-1, which is required to prepare virus stocks for in vitro or in vivo infectivity experiments, imposes a genetic selection that results in a spectrum of virus quasi-species that differ from the spectrum of variants present in the clinical specimens used to establish the culture [Kusumi et al.; J. Virol. 66:875 (1992); Meyerhans et al.; Cell 58:901-10 (1989)]. Because of these uncertainties, and even greater uncertainties related to the amount of virus transmitted, the site and cell type involved in initial replication, and the kinetics of virus dissemination, the ability of currently available in vitro or in vivo assays to reliably predict vaccine efficacy is questionable.

[0011] One of the candidate HIV-1 vaccines that have entered human clinical trials is recombinant gp120 prepared in Chinese hamster ovary (CHO) cells from the MN strain of HIV-1 (MN-rgp120) (Berman et al.; J. Virol. 7:4464-9 (1992)]. To date, approximately 499 adults have participated in Phase 1 and 2 immunogenicity and safety trials of this vaccine. The data collected thus far suggest that MN-rgp120 is safe, immunogenic, and elicits high titers of neutralizing antibodies in greater than 95% of individuals immunized according to a 0, 1, and 6 month immunization schedule [Belshe et al.; JAMA 272(6):475-80 (1994); McElrath; Seminars in Cancer Biol. 6:1-11 (1995)]. However, during the course of these trials, nine vaccinees who received MN-rgp120 have become infected with HIV-1 through high risk behavior. Small trials, such as these, in populations with low rates of infection and minimally sized placebo control groups do not have sufficient statistical power to confirm or refute vaccine efficacy.

[0012] However, effective vaccines based on gp120 or another HIV protein for protection against additional strains of HIV are still being sought to prevent the spread of this disease.

[0013] 3. Description of the Background Art

[0014] Recombinant subunit vaccines are described in Berman et al., PCT/US91/02250 (published as number WO91/15238 on Oct. 17, 1991). See also, e.g. Hu et al., Nature 328:721-724 (1987) (vaccinia virus-HIV envelope recombinant vaccine); Arthur et al., J. Virol. 63(12): 5046-5053 (1989) (purified gp120); and Berman et al., Proc. Natl. Acad. Sci. USA 85:5200-5204 (1988) (recombinant envelope glycoprotein gp120).

[0015] Numerous sequences for gp120 are known. The sequence of gp120 from the IIIB substrain of HIV-1_(LAI) referred to herein is that determined by Muesing et al., “Nucleic acid structure and expression of the human AIDS/lymphadenopathy retrovirus, Nature 313:450-458 (1985). The sequences of gp120 from the NY-5, Jrcsf, Z6, Z321, and HXB2 strains of HIV-1 are listed by Myers et al., “Human Retroviruses and AIDS; A compilation and analysis of nucleic acid and amino acid sequences,” Los Alamos National Laboratory, Los Alamos, N. Mex. (1992). The sequence of the Thai isolate A244 is provided by McCutchan et al., “Genetic Variants of HIV-1 in Thailand,” AIDS Res. and Human Retroviruses 8:1887-1895 (1992). The MN₁₉₈₄ clone is described by Gurgo et al., “Envelope sequences of two new United States HIV-1 isolates,” Virol. 164: 531-536 (1988). As used herein, MN, MN-rgp120, the MN clone or isolate refers to MN_(GNE). The MN_(GNE) amino acid sequence is Sequence ID No. 29.

[0016] Each of the above-described references is incorporated herein by reference in its entirety.

SUMMARY OF THE INVENTION

[0017] Oligonucleotide sequences encoding gp120 polypeptides from breakthrough isolates of vaccine trials using MN-rgp120 and the encoded gp120 polypeptides are provided. Use of the gp120 polypeptides from one or more of the isolates in a subunit vaccine, usually together with MN-rgp120, can provide protection against HIV strains that are sufficiently different from the vaccine strain (e.g.; MN-rgp120) that the vaccine does not confer protection against those strains. Antibodies induced by the polypeptides are also provided.

BRIEF DESCRIPTION OF THE DRAWINGS

[0018] FIGS. 1A-1G illustrate the kinetics of antibody response to MN-rgp120 in vaccinees infected with HIV-1. Sera were collected at the time points indicated and assayed for antibodies reactive with MN-rgp120 (open circles) or a synthetic peptide derived from the V3 domain of MN-rgp120 (closed circles). Arrows indicate dates of injection. Plus sign indicates the first time HIV-1 infection was detected. Shaded area indicates data collected after HIV-1 infection. Data from vaccinee C6 is shown in FIG. 1A; C8 in FIG. 1B; C7, FIG. 1C; C11, FIG. 1D; C10, FIG. 1E; C17, FIG. 1F; and C15, FIG. 1G.

[0019] FIGS. 2A-2G illustrate the kinetics of CD4 blocking antibody response in vaccinees infected with HIV-1. Sera were collected at the time points indicated and assayed for antibodies able to block the binding of [¹²⁵I]-labeled MN-rgp120 to cell surface CD4. Arrows indicate dates of injection. Plus sign indicates the first time HIV-1 infection was detected. Shaded area indicates data collected after HIV-1 infection. Data from vaccinee C6 is shown in FIG. 2A; C8 in FIG. 2B; C7, FIG. 2C; C11, FIG. 2D; C10, FIG. 2E; C17, FIG. 2F; and C15, FIG. 2G.

[0020] FIGS. 3A-3J illustrate predicted amino acid sequences of envelope glycoproteins (gp120) from breakthrough viruses. Proviral DNA sequences were amplified by PCR from PBMCs and cloned into the PRK5 expression plasmid. Two clones from each infected vaccinee were sequenced from double stranded plasmid DNA. Sequence numbering is with reference to the initiator methionine residue of gp120. For the purpose of comparison, the sequences shown begin at amino acid 12 of the mature, fully processed, envelope glycoproteins (corresponding to position 41 of the gp120 open reading frame). Shaded areas indicate sequences at neutralizing epitopes, dark boxes indicate polymorphisms thought to be important for the binding of virus neutralizing MAbs reactive with MN-rgp120. Conserved (C) regions and variable (V) regions are indicated above the sequences. Boxes indicate sequence homologies and polymorphisms.

[0021]FIG. 4 illustrates immunoprecipitation of recombinant gp120 prepared from breakthrough viruses. Recombinant gp120s from the seven breakthrough viruses were prepared by transient transfection of 293s cells. Cells were metabolically labeled with ³⁵S methionine and growth conditioned cell culture supernatants were immunoprecipitated with polyclonal antisera to MN-rgp120. Immunoprecipitates were resolved by SDS-PAGE and visualized by autoradiography. C8 lanes a and b correspond to clones C8.3 and C8.6; C6 lanes a and b correspond to clones C6.1 and C6.5; C7 lanes a and b correspond to clones C7.2 and C7.10; C17 lanes a and b correspond to C17.1 and C17.3; C11 lanes a and b correspond to clones C11.5 and C11.7; C10 lanes a and b correspond to clones C10.5 and C10.7; C15 lanes a and b correspond to clones C15.2 and C15.3.

[0022] FIGS. 5A-5D illustrate binding of monoclonal antibodies to recombinant gp120 from breakthrough viruses. Growth-conditioned cell culture supernatants were collected from 293s cells transiently transfected with plasmids directing the expression of breakthrough virus envelope glycoproteins. The relative rgp120 concentrations were determined by ELISA using MAb 5B6 specific for the HSV-1 glycoprotein D flag epitope at the amino terminus of all of the rgp120 variants described herein. The resulting rgp120 preparations were captured onto wells of microtiter plates coated with a polyclonal antibody specific for a conserved sequence in the C-terminus of gp120. The binding of virus neutralizing monoclonal antibodies reactive with gp120 was determined by ELISA. FIG. 5A, binding by MAb (5B6) specific for the HSV-1 glycoprotein D flag epitope; FIG. 5B, binding by MAb (1034) against the V3 domain of MN-rgp120; FIG. 5C binding by MAb (50.1) raised against a synthetic peptide corresponding to the V3 domain of MN-rgp120; FIG. 5D, binding by a human MAb (15e) known to block the binding of gp120 to CD4.

[0023]FIG. 6 depicts the mature envelope glycoprotein (gp120) from the MN clone of the MN strain of HIV-1 (SEQ. ID. NO. 29). Hypervariable domains are indicated in bold, and the V and C regions are indicated (according to Modrow et al., J. Virology 61(2):570 (1987). Potential glycosylation sites are marked with a (*).

DETAILED DESCRIPTION OF THE INVENTION

[0024] The present invention provides gp120 polypeptides from breakthrough isolates of HIV vaccine trials. Novel oligonucleotide sequences encoding gp120 from breakthrough isolates which can be used to express gp120 are also provided. Use of gp120 polypeptides from one or more of the isolates in a subunit vaccine, usually together with MN-rgp120, can provide protection against HIV strains that are sufficiently different from the vaccine strain (e.g.; MN-rgp120) that the vaccine does not confer protection against those strains.

[0025] In one embodiment, the vaccine is based on the use of the MN-rgp120 polypeptide (Sequence ID No. 29) and gp120 polypeptides from MN-like viruses that include neutralizing epitopes that are not present in the initial vaccine strain, and are sufficiently different from those of the vaccine strain, to have been able to cause HIV-1 infections in MN-rgp120 vaccinated individuals (i.e.; to result in breakthrough infections). Use of the initial vaccine strain empirically determines the viruses present in the population that contain additional neutralizing epitopes sufficiently different from those of the vaccine strain to escape protection induced by the vaccine strain. Use of an initial representative gp120 polypeptide in a vaccine acts as a sieve so that viruses that are not effectively protected against by the vaccine strain breakthrough the vaccine, empirically resulting in determination of additional strains in a given geographic region that are not is protected against by the initial vaccine strain. Use of gp120 from those breakthrough isolates complements the vaccine isolate by providing additional neutralizing epitopes not present in the initial vaccine strain, therefore creating a more complete vaccine that confers protection against multiple different virus strains in the region.

[0026] Prior HIV-1 vaccine strategies were based on selection of appropriate candidate vaccine polypeptides based on homology alignment studies. However, since some of the neutralizing epitopes are conformation-dependent and the location of all of these epitopes is not known, this approach necessarily cannot determine all of the neutralizing epitopes that should be included in a vaccine for a particular region. In contrast, the present approach uses a selected representative strain and empirically determines strains that are sufficiently different and therefore breakthrough the barrier of protection provided by the initial vaccination program. Those strains can be included in the vaccine to confer more complete protection from HIV strains in the region. In addition, those strains can be used alone to confer protection against the breakthrough virus.

[0027] In another embodiment, the invention comprises a vaccine containing a first HIV gp120 polypeptide sequence and a breakthrough isolate HIV gp120 polypeptide sequence from a vaccinee vaccinated with a vaccine including the first HIV gp120 polypeptide sequence, the HIV gp120 polypeptide sequences being in a suitable carrier. Fragments of one or both HIV gp120 polypeptide sequences can be substituted for one or both of the corresponding HIV gp120 polypeptide sequences.

[0028] Preferably, the first gp120 polypeptide sequence contains neutralizing epitopes found in one or more gp120 polypeptides present in isolates from the geographical region where the initial vaccine (i.e., the vaccine that gives rise to the breakthrough isolate) is administered. More preferably, the first gp120 polypeptide sequence contains at least one of the more common neutralizing epitopes for the region, and most preferably the first gp120 polypeptide sequence contains at least one of the three most common neutralizing epitopes.

[0029] gp120 polypeptide sequences suitable for use as the first gp120 polypeptide sequence include gp120 MN, the Thai isolate A244 sequence (hereinafter “gp120 A244”), gp120 MN-GNE6 (Sequence ID No. 31; also known in the art as “gp120 GNE6”), and gp120 MN-GNE8 (Sequence ID No. 33; also known in the art as “gp120 GNE8”), and the like. gp120 MN, gp120 MN-GNE6, and gp120 MN-GNE8 are especially preferred for use as the first gp120 polypeptide sequence in initial vaccines for North America. gp120 A244 is especially preferred for use as the first gp120 polypeptide sequence in initial vaccines for Thailand.

[0030] In a variation of this embodiment, the vaccine includes two different (i.e., first and second) gp120 polypeptide sequences, or fragments thereof, in combination with a breakthrough isolate HIV gp120 polypeptide sequence. The latter can be from a vaccinee vaccinated with either or both of the first and second HIV gp120 polypeptide sequences.

[0031] Exemplary vaccines include those containing combinations of gp120 MN, gp120 A244, gp120 MN-GNE6 (Sequence ID No. 31), and gp120 MN-GNE8 (Sequence ID No. 33). Combinations of gp120 MN and gp120 A244 or gp120 MN-GNE8 (Sequence ID No. 33) with a breakthrough isolate HIV gp120 polypeptide sequence are especially preferred.

[0032] In vaccines containing gp120 MN, the breakthrough isolate HIV gp120 polypeptide sequence can be an HIV gp120 polypeptide sequence selected from the group consisting of Sequence ID Nos. 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22, 24, 26, and 28, and fragments thereof.

[0033] The term “subunit vaccine” is used herein, as in the art, to refer to a viral vaccine that does not contain virus, but rather contains one or more viral proteins or fragments of viral proteins. As used herein, the term “multivalent”, means that the vaccine contains gp120 from at least two HIV isolates having different amino acid sequences.

[0034] The term “breakthrough isolate” or “breakthrough virus” is used herein, as in the art, to refer to a virus isolated from a vaccinee.

[0035] The terms “amino acid sequence”, “polypeptide sequence”, and “polypeptide” are used interchangeably herein as in the art, as are the terms “nucleic acid sequence”, “nucleotide sequence”, and “oligonucleotide”.

[0036] Polypeptides from Breakthrough Isolates

[0037] The gp120 polypeptides of this invention correspond to the amino acid sequences of seven breakthrough isolates which are illustrated below in Table 1. A polypeptide of this invention includes an HIV gp120 amino acid sequence illustrated in Table 1 (Sequence ID Nos. 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 25, and 27) and fragments thereof. The polypeptides of this invention can include fused sequences from two or more HIV gp120 or gp160 amino acid sequences.

[0038] The polypeptide can also be joined to another viral protein, such as a flag epitope amino acid sequence. The term “flag epitope” is used herein, as in the art, to denote an amino acid sequence that includes an epitope recognized by a monoclonal antibody. Flag epitopes facilitate using single monoclonal antibody affinity purification of a plurality of different recombinant proteins, each having the flag epitope recognized by the monoclonal antibody. Numerous amino acid sequences can function as flag epitopes. The N-terminal sequences of Herpes Simplex Virus Type 1 (HSV-1) glycoprotein D (gD-1) is conveniently used as the flag epitope and its use is described in detail in the examples. The flag epitope is conveniently fused to the N terminus of the HIV gp120 polypeptide sequence. Alternatively, however, monoclonal antibodies that recognize neutralizing epitopes in the rgp120 sequences can be used to affinity purify the amino acid sequences, and a flag epitope can be omitted.

[0039] In addition, various signal sequences can be joined to a polypeptide of this invention. Although rgp120 is secreted to some extent in HIV cultures, the amount of the envelope glycoprotein released from (secreted by) the host cells varies widely from strain to strain. Various signal sequences can be introduced into the polypeptide by joining a nucleotide sequence encoding the signal sequence to the nucleotide sequence encoding the rgp120 to facilitate secretion of rgp120 from the cells. For example, Chiron HIV gp120 polypeptides include a signal sequence from tissue plasminogen activator (TPA) that provides good secretion of rgp120. Additional signal sequences are well known and include the N-terminal domain of murine leukemia virus surface protein gp70 described by Kayman et al., J. Virol. 68:400-410 (1984).

[0040] Table 1 illustrates the nucleotide and deduced amino acid sequences for two clones of each the seven breakthrough isolates of this invention. The clones are: C6.1; C6.5; C8.3; C8.6; C15.2; C15.3; C7.2; C7.10; C11.5; C11.7; C10.5; C10.7; C17.1; and C17.3. These sequences are SEQ. ID. NOs. 1-28, the first sequence number for each clone being the nucleotide sequence and the second being the amino acid sequence. The amino acid sequence for MN and the nucleotide and deduced amino acid sequences for MN-GNE6 and MN-GNE8 are illustrated in the sequence listing hereinafter. In the listing for MN-GNE6, a stop codon appears at amino acid residue position 51. This stop codon can be replaced with a codon encoding the corresponding amino acid from MN or MN-GNE8 or another isolate. TABLE 1 CLONE C6.1      GGG GTA CCT GTG TGG AAG GAA GCA ACC ACC ACT CTA 36      Gly Val Pro Val Trp Lys Glu Ala Thr Thr Thr Leu       1               5                  10 TTT TGT GCA TCA GAT GCT AAA GCA TAT GAC ACA GAG GTG 75 Phe Cys Ala Ser Asp Ala Lys Ala Tyr Asp Thr Glu Val           15                  20                  25 CAT AAT GTT TGG GCC ACA CAT GCT TGT GTA CCC ACA GAC 114 His Asn Val Trp Ala Thr His Ala Cys Val Pro Thr Asp                  30                  35 CCA AAC CCA CAA GAA ATG GTA TTG GAA AAT GTG ACA GAA 153 Pro Asn Pro Gln Glu Met Val Leu Glu Asn Val Thr Glu      40                  45                  50 GAT TTT AAC ATG TGG AAA AAT GAC ATG GTA GAA CAG ATG 192 Asp Phe Asn Met Trp Lys Asn Asp Met Val Glu Gln Met              55                  60 CAT GAG GAT ATA ATC AGT TTA TGG GAT CAA AGC CTA AAA 231 His Glu Asp Ile Ile Ser Leu Trp Asp Gln Ser Leu Lys  65                  70                  75 CCA TGT GTA AAA TTA ACC CCA CTC TGT ATT ACT TTA AAT 270 Pro Cys Val Lys Leu Thr Pro Leu Cys Ile Thr Leu Asn          80                  85                  90 TGC ACC AAT TGG AAG AAG AAT GAT ACT AAA ACT AAT AGT 309 Cys Thr Asn Trp Lys Lys Asn Asp Thr Lys Thr Asn Ser                  95                 100 AGT AGT ACT ACA ACT AAT AAT AGT AGT GCT ACA GCT AAT 348 Ser Ser Thr Thr Thr Asn Asn Ser Ser Ala Thr Ala Asn     105                 110                 115 AGT AGT AGT ACT ACA ACT AAT AGT AGT TGG GGA GAG ATA 387 Ser Ser Ser Thr Thr Thr Asn Ser Ser Trp Gly Glu Ile             120                 125 AAG GAG GGA GAA ATA AAG AAC TGC TCT TTC AAT ATC ACC 426 Lys Glu Gly Glu Ile Lys Asn Cys Ser Phe Asn Ile Thr 130                 135                 140 ACA AGC ATA AGA GAC AAG GTG AAG AAA GAA TAT GCA CTT 465 Thr Ser Ile Arg Asp Lys Val Lys Lys Glu Tyr Ala Leu         145                 150                 155 TTT TAT AGC CTT GAT GTA GTA CCA ATA GAA AAT GAT AAT 504 Phe Tyr Ser Leu Asp Val Val Pro Ile Glu Asn Asp Asn                 160                 165 ACT AGC TAT AGG TTG AGA AGT TGT AAC ACC TCA GTC ATT 543 Thr Ser Tyr Arg Leu Arg Ser Cys Asn Thr Ser Val Ile     170                 175                 180 ACA CAA GCC TGT CCA AAG GTA ACT TTT GAG CCA ATT CCC 582 Thr Gln Ala Cys Pro Lys Val Thr Phe Glu Pro Ile Pro             185                 190 ATA CAT TAT TGT ACC CCG GCT GGT TTT GCG ATT CTG AAG 621 Ile His Tyr Cys Thr Pro Ala Gly Phe Ala Ile Leu Lys 195                 200                 205 TGT AGA GAT AAA AAG TTC AAT GGA ACA GGA CCA TGC AAA 660 Cys Arg Asp Lys Lys Phe Asn Gly Thr Gly Pro Cys Lys         210                 215                 220 AAT GTT AGC ACA GTA CAA TGT GCA CAT GGA ATT AAG CCA 699 Asn Val Ser Thr Val Gln Cys Ala His Gly Ile Lys Pro                 225                 230 GTA GTG TCA ACT CAA CTG CTG TTA AAT GGC AGC CTA GCA 738 Val Val Ser Thr Gln Leu Leu Leu Asn Gly Ser Leu Ala     235                 240                 245 GAA GAA GAG GTA ATA ATT AGA TCT GCC AAT TTC TCA AAC 777 Glu Glu Glu Val Ile Ile Arg Ser Ala Asn Phe Ser Asn             250                 255 AAT GCT AAA ATC ATA ATA GTA CAG TTG AGG GAA CCT GTA 816 Asn Ala Lys Ile Ile Ile Val Gln Leu Arg Glu Pro Val 260                 265                 270 GAA ATT AAT TGT ACA AGA CCC AGC AAC AAT ACA ATA AAA 855 Glu Ile Asn Cys Thr Arg Pro Ser Asn Asn Thr Ile Lys         275                 280                 285 GGT ATA CAC ATA GGA CCA GGG AGA GCA TTT TAT GCA ACA 894 Gly Ile His Ile Gly Pro Gly Arg Ala Phe Tyr Ala Thr                 290                 295 GGA GAC ATA CGA GGA GAT ATA AGA CAA GCA CAT TGT AAC 933 Gly Asp Ile Arg Gly Asp Ile Ary Gln Ala His Cys Asn     300                 305                 310 ATT AGT GGA GCA AAA TGG AAT AAC ACT TTA AAG AAG GTA 972 Ile Ser Gly Ala Lys Trp Asn Asn Thr Leu Lys Lys Val             315                 320 GTT AAA AAA TTA AAA GAA CAA TTT CCA AAT AAA ACA ATA 1011 Val Lys Lys Leu Lys Glu Gln Phe Pro Asn Lys Thr Ile 325                 330                 335 GTC TTT AAC CAT TCC TCA GGA GGG GAC CCA GAA ATT GTA 1050 Val Phe Asn His Ser Ser Gly Gly Asp Pro Glu Ile Val         340                 345                 350 ATG CAC AGT TTT AAT TGT CAA GGG GAA TTT TTC TAC TGT 1089 Met His Ser Phe Asn Cys Gln Gly Glu Phe Phe Tyr Cys                 355                 360 AAT ACA ACA AAG CTG TTT AAT AGT ACT TGG AAT GAT ACT 1128 Asn Thr Thr Lys Leu Phe Asn Ser Thr Trp Asn Asp Thr     365                 370                 375 ACA GAG TCA AAT AAC AAT GAT AGT ACT ATT ACA CTC CCA 1167 Thr Glu Ser Asn Asn Asn Asp Ser Thr Ile Thr Leu Pro             380                 385 TGC AGA ATA AAA CAA ATT ATA AAC ATG TGG CAG GAA ATA 1206 Cys Arg Ile Lys Gln Ile Ile Asn Met Trp Gln Glu Ile 390                 395                 400 GGA AAA GCA ATG TAT GCC CCT CCC ACC AGA GGA GAA ATT 1245 Gly Lys Ala Met Tyr Ala Pro Pro Thr Arg Gly Glu Ile         405                 410                 415 AAA TGT TCA TCA AAT ATT ACA GGA CTA CTG TTA ATA AGA 1284 Lys Cys Ser Ser Asn Ile Thr Gly Leu Leu Leu Ile Arg                 420                 425 GAT GGT GGT ATT AAC ACT AGC GAT GCC ACC GAG ACC TTC 1323 Asp Gly Gly Ile Asn Thr Ser Asp Ala Thr Glu Thr Phe     430                 435                 440 AGA CCG GGA GGA GGA GAT ATG A00 GAC AAT TGG AGA AGT 1362 Arg Pro Gly Gly Gly Asp Met Arg Asp Asn Trp Arg Ser             445                 450 GAA TTA TAT AAA TAT AAA GTA GTG AAA ATT GAG CCA TTA 1401 Glu Leu Tyr Lys Tyr Lys Val Val Lys Ile Glu Pro Leu 455                 460                 465 GGA GTA GCA CCC ACC AAG GCA AAG AGA AGA GTG GTG CAG 1440 Gly Val Ala Pro Thr Lys Ala Lys Arg Arg Val Val Gln         470                 475                 480 AGA GAA AAA AGA GCA GTA ACA CTA GGA GCT ATG TTC CTT 1479 Arg Glu Lys Arg Ala Val Thr Leu Gly Ala Met Phe Leu                 485                 490 GGG TTC TTA GGA GCA TAA AGC TTC 1503 Gly Phe Leu Gly Ala Xaa Ser Phe     495                 500 501 CLONE C6.5     GGG GTA CCT GTA TGG AAA GAA GCA ACC ACC ACT CTA 36     Gly Val Pro Val Trp Lys Glu Ala Thr Thr Thr Leu        1               5                  10 TTT TGT GCA TCA GAT GCT AAA GCA TAT GAC ACA GAG GTG 75 Phe Cys Ala Ser Asp Ala Lys Ala Tyr Asp Thr Glu Val          15                  20                  25 CAT AAT GTT TGG GCC ACA CAT GCT TGT GTA CCC ACA GAC 114 His Asn Val Trp Ala Thr His Ala Cys Val Pro Thr Asp                  30                 35 CCA AAC CCA CAA GAA ATG GTA TTG GAA AAT GTG ACA GAA 153 Pro Asn Pro Gln Glu Met Val Leu Glu Asn Val Thr Glu      40                  45                  50 GAT TTT AAC ATG TGG AAA AAT GAC ATG GTA GAA CAG ATG 192 Asp Phe Asn Met Trp Lys Asn Asp Met Val Glu Gln Met              55                  60 CAT GAG ANT ATA ATC AGT TTA TGG GAT CAA AGC CTA AAA 231 His Glu Xaa Ile Ile Ser Leu Trp Asp Gln Ser Leu Lys  65                  70                  75 CCA TGT GTA AAA TTA ACC CCA CTC TGT ATT ACT TTA AAT 270 Pro Cys Val Lys Leu Thr Pro Leu Cys Ile Thr Leu Asn         80                  85                  90 TGC ACC AAT TGG AAG GAG AAT GAT ACT AAA ACT AAT AGT 309 Cys Thr Asn Trp Lys Glu Asn Asp Thr Lys Thr Asn Ser                  95                 100 AGT AGT ACT ACA ACT AAT AAT AGT AGT GCT ACA GCT AAT 348 Ser Ser Thr Thr Thr Asn Asn Ser Ser Ala Thr Ala Asn     105                 110                 115 AGT AGT AGT ACT ACA ACT AAT AGT AGT TGG GGA GAG ATA 387 Ser Ser Ser Thr Thr Thr Asn Ser Ser Trp Gly Glu Ile             120                 125 AAG GAG GGA GAA ATA AAG AAC TGC TCT TTC AAT ATC ACC 426 Lys Glu Gly Glu Ile Lys Asn Cys Ser Phe Asn Ile Thr 130                 135                 140 ACA GGC ATA AGA GAC AAG GTG AAG AAA GAA TAT GCA CTT 465 Thr Gly Ile Arg Asp Lys Val Lys Lys Glu Tyr Ala Leu         145                 150                 155 TTT TAT AGC CTT GAT GTA GTA CCA ATA GAA AAT GAT AAT 504 Phe Tyr Ser Leu Asp Val Val Pro Ile Glu Asn Asp Asn                 160                 165 ACT AGC TAT AGG TTG AGA AGT TGT AAC ACC TCA GTC ATT 543 Thr Ser Tyr Arg Leu Arg Ser Cys Asn Thr Ser Val Ile     170                 175                 180 ACA CAA GCC TGT CCA AAG GTA ACT TTT GAG CCA ATT CCC 582 Thr Gln Ala Cys Pro Lys Val Thr Phe Glu Pro Ile Pro             185                 190 ATA CAT TAT TGT ACC CCG GCT GGT TTT GCG ATT CTG AAG 621 Ile His Tyr Cys Thr Pro Ala Gly Phe Ala Ile Leu Lys 195                 200                 205 TGT AAA GAT AAA AAG TTC AAT GGA ACA GGA CCA TGC AAA 660 Cys Lys Asp Lys Lys Phe Asn Gly Thr Gly Pro Cys Lys         210                 215                 220 AAT GTT AGC ACA GTA CAA TGT ACA CAT GGA ATT AAG CCA 699 Asn Val Ser Thr Val Gln Cys Thr His Gly Ile Lys Pro                 225                 230 GTA GTG TCA ACT CAA CTG CTG TTA AAT GGC AGC CTA GCA 738 Val Val Ser Thr Gln Leu Leu Leu Asn Gly Ser Leu Ala     235                 240                 245 GAA GAA GAG GTA ATA ATT AGA TCT GCC AAT TTC TCA AAC 777 Glu Glu Glu Val Ile Ile Arg Ser Ala Asn Phe Ser Asn             250                 255 AAT GCT AAA ATC ATA ATA GTA CAG TTG AAG GAA CCT GTA 816 Asn Ala Lys Ile Ile Ile Val Gln Leu Lys Glu Pro Val 260                 265                 27 GAA ATT AAT TGT ACA AGA CCC AGC AAC AAT ACA ATA AAA 855 Glu Ile Asn Cys Thr Arg Pro Ser Asn Asn Thr Ile Lys         275                 280                 285 GGT ATA CAC ATA GGA CCA GGG AGA GCA TTT TAT GCA ACA 894 Gly Ile His Ile Gly Pro Gly Arg Ala Phe Tyr Ala Thr                 290                 295 GGA GAC ATA CGA GGA GAT ATA AGA CAA GCA CAT TGT AAC 933 Gly Asp Ile Arg Gly Asp Ile Arg Gln Ala His Cys Asn     300                 305                 310 ATT AGT GGA GCA AAA TGG AAT AAC ACT TTA AAG AAG GTA 972 Ile Ser Gly Ala Lys Trp Asn Asn Thr Leu Lys Lys Val             315                 320 GTT ATA AAA TTA AAA GAA CAA TTT CCA AAT AAA ACA ATA 1011 Val Ile Lys Leu Lys Glu Gln Phe Pro Asn Lys Thr Ile 325                 330                 335 GTC TTT AAC CAT TCC TCA GGA GGG GAC CCA GAA ATT GTA 1050 Val Phe Asn His Ser Ser Gly Gly Asp Pro Glu Ile Val         340                 345                 350 ATG CAC AGT TTT AAT TGT CAA GGG GAA TTT TTC TAC TGT 1089 Met His Ser Phe Asn Cys Gln Gly Glu Phe Phe Tyr Cys                 355                 360 AAT ACA ACG AAG CTG TTT AAT AGT ACT TGG AAT GAT ACT 1128 Asn Thr Thr Lys Leu Phe Asn Ser Thr Trp Asn Asp Thr     365                 370                 375 ACA GAG TCA AAT AAC AAT GAT AGT ACT ATT ACA CTC CCA 1167 Thr Glu Ser Asn Asn Asn Asp Ser Thr Ile Thr Leu Pro             380                 385 TGC AGA ATA AAA CAA ATT ATA AAC ATG TGG CAG GAA GTA 1206 Cys Arg Ile Lys Gln Ile Ile Asn Met Trp Gln Glu Val 390                 395                 400 GGA AAA GCA ATG TAT GCC CCT CCC ATC AGA GGA GAA ATT 1245 Gly Lys Ala Met Tyr Ala Pro Pro Ile Arg Gly Glu Ile         405                 410                 415 AAA TGT TCA TCA AAT ATT ACA GGA CTA CTG TTA ACA AGA 1284 Lys Cys Ser Ser Asn Ile Thr Gly Leu Leu Leu Thr Arg                 420                 425 GAT GGT GGT ATT AAC ACT AGC GAT GCC ACC GAG ACC TTC 1323 Asp Gly Gly Ile Asn Thr Ser Asp Ala Thr Glu Thr Phe     430                 435                 440 AGA CCG GGA GGA GGA GAT ATG AGG GAC AAT TGG AGA AGT 1362 Arg Pro Gly Gly Gly Asp Met Arg Asp Asn Trp Arg Ser             445                 450 GAA TTA TAT AAA TAT AAA GTA GTG AAA ATT GAG CCA TTA 1401 Glu Leu Tyr Lys Tyr Lys Val Val Lys Ile Glu Pro Leu 455                 460                 465 GGA GTA GCA CCC ACC AAG GCA AAG AGA AGA GTG GTG CAG 1440 Gly Val Ala Pro Thr Lys Ala Lys Arg Arg Val Val Gln         470                 475                 480 AGA GAA AAA AGA GCA GTA ACA CTA GGA GCT ATG TTC CTT 1479 Arg Glu Lys Arg Ala Val Thr Leu Gly Ala Met Phe Leu                 485                 490 GGG TTC TTG GGA GCA TAA AGC TTC 1503 Gly Phe Leu Gly Ala Xaa Ser Phe     495                 500 501 CLONE C8.3 G   GTA CCT GTA TGG AAA GAA GCA ACC ACC ACT CTA TTT 37     Val Pro Val Trp Lys Glu Ala Thr Thr Thr Leu Phe       1               5                  10 TGT GCA TCA GAT GCT AAA GCA TAT GAT ACA GAG GTA CAT 76 Cys Ala Ser Asp Ala Lys Ala Tyr Asp Thr Glu Val His          15                  20                  25 AAT GTT TGG GCT ACA CAT GCC TGT GTA CCC ACA GAC CCC 115 Asn Val Trp Ala Thr His Ala Cys Val Pro Thr Asp Pro                  30                  35 AAC CCA CAA GAA GTA GTA TTG GAA AAT GTA ACA GAA AAT 154 Asn Pro Gln Glu Val Val Leu Glu Asn Val Thr Glu Asn      40                  45                  50 TTT AAC ATG TGG AAA AAT AAC ATG GTA GAA CAG ATG CAT 193 Phe Asn Met Trp Lys Asn Asn Met Val Glu Gln Met His              55                  60 GAG GAT ATA ATC AGT TTA TGG GAT CAA AGT CTA AAG CCA 232 Glu Asp Ile Ile Ser Leu Trp Asp Gln Ser Leu Lys Pro  65                  70                 75 TGT GTA AAA TTA ACC CCA CTC TGT GTT ACT TTA AAT TGC 271 Cys Val Lys Leu Thr Pro Leu Cys Val Thr Leu Asn Cys          80                  85                  90 ACT AAT TTG GAG AAT GCT AAT AAT ACC GAG AAT GCT AAT 310 Thr Asn Leu Glu Asn Ala Asn Asn Thr Glu Asn Ala Asn                  95                 100 AAT ACC AAT AAT TAT ACC TTG GGG ATG GAG AGA GGT GAA 349 Asn Thr Asn Asn Tyr Thr Leu Gly Met Glu Arg Gly Glu     105                 110                 115 ATA AAA AAC TGC TCT TTC AAT ATC ACC ACA AGC TTA AGA 388 Ile Lys Asn Cys Ser Phe Asn Ile Thr Thr Ser Leu Arg             120                 125 GAT AAG GTG AAA AAA GAA TAT GCA TTG TTT TAT AAA CTT 427 Asp Lys Val Lys Lys Glu Tyr Ala Leu Phe Tyr Lys Leu 130                 135                 140 GAT GTA GTA CAA ATA GAT AAT AGT ACC AAC TAT AGG CTG 466 Asp Val Val Gln Ile Asp Asn Ser Thr Asn Tyr Arg Leu         145                 150                 155 ATA AGT TGT AAT ACC TCA OTC ATT ACA CAG GCC TGT CCA 505 Ile Ser Cys Asn Thr Ser Val Ile Thr Gln Ala Cys Pro                 160                 165 AAG GTA TCC TTT GAG CTA ATT CCC ATA CAT TAT TGT GCC 544 Lys Val Ser Phe Glu Leu Ile Pro Ile His Tyr Cys Ala     170                 175                 180 CCG GCT GCT TTT GCG ATT CTA AAG TGT AAA GAT AAG AAG 583 Pro Ala Gly Phe Ala Ile Leu Lys Cys Lys Asp Lys Lys             185                 190 TTC AAT GGA ACA GGA CCA TGT AAA AAT OTC AGC ACA GTA 622 Phe Asn Gly Thr Gly Pro Cys Lys Asn Val Ser Thr Val 195                 200                 205 CAA TGT ACA CAT GGA ATT AOA CCA GTA GTA TCA ACT CAA 661 Gln Cys Thr His Gly Ile Arg Pro Val Val Ser Thr Gln         210                 215                 220 CTA CTG TTA AAT GGC AGT CTA GCA GAA GAA GAG ATA GTA 700 Leu Leu Leu Asn Gly Ser Leu Ala Glu Glu Glu Ile Val                 225                 230 ATT AGA TCT GAA AAT ATC ACA GAC AAT GCT AAA ACC ATA 739 Ile Arg Ser Glu Asn Ile Thr Asp Asn Ala Lys Thr Ile     235                 240                 245 ATA GTG CAG CTA AAT GAA TCT ATA GTG ATT AAT TGT ACA 778 Ile Val Gln Leu Asn Glu Ser Ile Val Ile Asn Cys Thr             250                 255 AGA CCC AAT AAC AAC ACA AGA AAA AGT ATA AAT ATA GGA 817 Arg Pro Asn Asn Asn Thr Arg Lys Ser Ile Asn Ile Gly 260                 265                 270 CCA GGG AGA GCA TTC TAT ACA ACA GGA GAC ATA ATA GGA 856 Pro Gly Arg Ala Phe Tyr Thr Thr Gly Asp Ile Ile Gly         275                 280                 285 GAT ATA AGA CAA GCA CAT TGT AAC CTT AGT AAA ACA CAA 895 Asp Ile Arg Gln Ala His Cys Asn Leu Ser Lys Thr Gln                 290                 295 TGG GAA AAA ACG TTA AGA CAG ATA GCT ATA AAA TTA GAA 934 Trp Glu Lys Thr Leu Arg Gln Ile Ala Ile Lys Leu Glu     300                 305                 310 GAA AAA TTT AAG AAT AAA ACA ATA GCC TTT AAT AAA TCC 973 Glu Lys Phe Lys Asn Lys Thr Ile Ala Phe Asn Lys Ser             315                 320 TCA GGA GGG GAC CCA GAA ATT GTA ATG CAC AGT TTT AAT 1012 Ser Gly Gly Asp Pro Glu Ile Val Met His Ser Phe Asn 325                 330                 335 TGT GGA GGG GAA TTT TTC TAC TGT AAT ACA ACA AAA CTG 1051 Cys Gly Gly Glu Phe Phe Tyr Cys Asn Thr Thr Lys Leu         340                 345                 350 TTT AAT AGT ACC TGG AAT TTA ACA CAA CCG TTT AGT AAT 1090 Phe Asn Ser Thr Trp Asn Leu Thr Gln Pro Phe Ser Asn                 355                 360 ACC GGG AAT CGT ACT GAA GAG TTA AAT ATT ACA CTC CCA 1129 Thr Gly Asn Arg Thr Glu Glu Leu Asn Ile Thr Leu Pro     365                 370                 375 TGG AGA ATA AAA CAA ATC ATA AAC TTG TGG CAG GAA GTA 1168 Cys Arg Ile Lys Gln Ile Ile Asn Leu Trp Gln Glu Val             380                 385 GGC AAA GCA ATG TAT GCC CCT CCC ATC AGA GGA CAA ATT 1207 Gly Lys Ala Met Tyr Ala Pro Pro Ile Arg Gly Gln Ile 390                 395                 400 AGA TGT TCA TCA AAT ATT ACA GGG CTA CTA TTA ACA AGA 1246 Arg Cys Ser Ser Asn Ile Thr Gly Leu Leu Leu Thr Arg         405                 410                 415 GAT GGT GGA AGT AAC ACC GGT GAC AAC AGG ACT GAG ACC 1285 Asp Gly Gly Ser Asn Thr Gly Asp Asn Arg Thr Glu Thr                 420                 425 TTT AGA CCT GGA GGA GGA GAT ATG AGG GAC AAT TGG AGA 1324 Phe Arg Pro Gly Gly Gly Asp Met Arg Asp Asn Trp Arg     430                 435                 440 AGT GAA TTA TAT AAA TAT AAA GTA GTA AGA ATT GAA CCA 1363 Ser Glu Leu Tyr Lys Tyr Lys Val Val Arg Ile Glu Pro             445                 450 TTA GGA GTA GCA CCC ACC CAG GCA AAG AGA AGA GTG GTG 1402 Leu Gly Val Ala Pro Thr Gln Ala Lys Arg Arg Val Val 455                 460                 465 CAA AGA GAA AAA AGA GCA GTG GGG ATA GGA GCT ATG TTC 1441 Gln Arg Glu Lys Arg Ala Val Gly Ile Gly Ala Met Phe         470                 475                 480 CTT GGG TTC TTG GGA GAT AA 1461 Leu Gly Phe Leu Gly Asp                  485 486 CLONE C8.6 G   GTA CCT GTG TGG AAA GAA GCA ACC ACC ACT CTA TTT 37     Val Pro Val Trp Lys Glu Ala Thr Thr Thr Leu Phe       1               5                  10 TGT GCA TCA GAT GCT AAA GCA TAT GAT ACA GAG GTA CAT 76 Cys Ala Ser Asp Ala Lys Ala Tyr Asp Thr Glu Val His          15                  20                  25 AAT GTT TGG GCT ACA CAT GCC TGT GTA CCC ACA GAC CCC 115 Asn Val Trp Ala Thr His Ala Cys Val Pro Thr Asp Pro                 30                  35 AAC CCA CAA GAA GTA GTA TTG GAA AAT GTA ACA GAA AAT 154 Asn Pro Gln Glu Val Val Leu Glu Asn Val Thr Glu Asn      40                  45                  50 TTT AAC ATG TGG AAA AAT AAC ATG GTA GAA CAG ATG CAT 193 Phe Asn Met Trp Lys Asn Asn Met Val Glu Gln Met His              55                  60 GAG GAT ATA ATC AGT TTA TGG GAT CAA AGT CTA AAG CCA 232 Glu Asp Ile Ile Ser Leu Trp Asp Gln Ser Leu Lys Pro  65                  70                  75 TGT GTA AAA TTA ACC CCA CTC TGT GTT ACT TTA AAT TGC 271 Cys Val Lys Leu Thr Pro Leu Cys Val Thr Leu Asn Cys          80                  85                  90 ACT AAT TTG GAG AAT GCT AAT AAT ACC GAG AAT GCT AAT 310 Thr Asn Leu Glu Asn Ala Asn Asn Thr Glu Asn Ala Asn                  95                 100 AAT ACC AAT AAT TAT ACC TTG GGG ATG GAG AGA GGT GAA 349 Asn Thr Asn Asn Tyr Thr Leu Gly Met Glu Arg Gly Glu     105                 110                 115 AGA AAA AAC TGC TCT TTC AAT ATC ACC ACA AGC TTA AGA 388 Arg Lys Asn Cys Ser Phe Asn Ile Thr Thr Ser Leu Arg             120                 125 GAT AAG GGG AAA AAA GAA TAT GCA TTG TTT TAT AAA CTT 427 Asp Lys Gly Lys Lys Glu Tyr Ala Leu Phe Tyr Lys Leu 130                 135                 140 GAT GTA GTA CAA ATA GAT AAT AGT ACC AAC TAT AGG CTG 466 Asp Val Val Gln Ile Asp Asn Ser Thr Asn Tyr Arg Leu         145                 150                 155 ATA AGT TGT AAT ACC TCA GTC ATT ACA CAG GCC TGT CCA 505 Ile Ser Cys Asn Thr Ser Val Ile Thr Gln Ala Cys Pro                 160                 165 AAG GTA TCC TTT GAG CCA ATT CCC ATA CAT TAT TGT GCC 544 Lys Val Ser Phe Glu Pro Ile Pro Ile His Tyr Cys Ala     170                 175                 180 CCG GCT GGT TTT GCG ATT CTA AAG TGT AAA GAT AAG AAG 583 Pro Ala Gly Phe Ala Ile Leu Lys Cys Lys Asp Lys Lys             185                 190 TTC AAT GGA ACA GGA CCA TGT AAA AAT GTC AGG ACA GTA 622 Phe Asn Gly Thr Gly Pro Cys Lys Asn Val Arg Thr Val 195                 200                 205 CAA TGT ACA CAT GGA ATT AGA CCA GTA GTA TCA ACT CAA 661 Gln Cys Thr His Gly Ile Arg Pro Val Val Ser Thr Gln          210                215                 220 CTA CTG TTA AAT GGC AGT CTA GCA GAA GAA GAG ATA GTA 700 Leu Leu Leu Asn Gly Ser Leu Ala Glu Glu Glu Ile Val                 225                 230 ATT AGA TCT GAA AAT ATC ACA GAC AAT GCT AAA ACC ATA 739 Ile Arg Ser Glu Asn Ile Thr Asp Asn Ala Lys Thr Ile     235                 240                 245 ATA GTG GAG CTA AAT GAA TCT ATA GTG ATT AAT TGT ACA 778 Ile Val Gln Leu Asn Glu Ser Ile Val Ile Asn Cys Thr             250                 255 AGA CCC AAT AAC AAC ACA AGA AAA AGT ATA AAT ATA GGA 817 Arg Pro Asn Asn Asn Thr Arg Lys Ser Ile Asn Ile Gly 260                 265                 270 CCA GGG AGA GCA TTC TAT ACA ACA GGA GAC ATA ATA GGA 856 Pro Gly Arg Ala Phe Tyr Thr Thr Gly Asp Ile Ile Gly         275                 280                 285 GAT ATA AGA CAA GCA CAT TGT AAC CTT AGT AAA ACA CAA 895 Asp Ile Arg Gln Ala His Cys Asn Leu Ser Lys Thr Gln                 290                 295 TGG GAA AAA ACG TTA AGA CAG ATA GCT ATA AAA TTA GAA 934 Trp Glu Lys Thr Leu Arg Gln Ile Ala Ile Lys Leu Glu     300                 305                 310 GAA AAA TTT AAG AAT AAA ACA ATA GCC TTT AAT AAA TCC 973 Glu Lys Phe Lys Asn Lys Thr Ile Ala Phe Asn Lys Ser             315                 320 TCA GGA GGG GAC CCA GAA ATT GTA ATG CAC AGT TTT AAT 1012 Ser Gly Gly Asp Pro Glu Ile Val Met His Ser Phe Asn 325                 330                 335 TGT GGA GGG GGA TTT TTC TAC TGT AGT ACG AGA AAA CTG 1051 Cys Gly Gly Gly Phe Phe Tyr Cys Ser Thr Arg Lys Leu         340                 345                 350 TTT AAT AGT ACC TGG AAT TTA ACA CAA CCG TTT AGT AAT 1090 Phe Asn Ser Thr Trp Asn Leu Thr Gln Pro Phe Ser Asn                 355                 360 ACC GGG GAT CGT ACT GAA GAG TTA AAT ATT ACA CTC CCA 1129 Thr Gly Asp Arg Thr Glu Glu Leu Asn Ile Thr Leu Pro     365                 370                 375 TGC AGA ATA AAA CAA ATC ATA AAC TTG TGG CAG GAA GTA 1168 Cys Arg Ile Lys Gln Ile Ile Asn Leu Trp Gln Glu Val             380                 385 GGC AAA GCA ATG TAT GCC CCT CCC ATC AGA GGA CAA ATT 1207 Gly Lys Ala Met Tyr Ala Pro Pro Ile Arg Gly Gln Ile 390                 395                 400 AGA TGT TCA TCA AAT ATT ACA GGG CTA CTA TTA AGG AGA 1246 Arg Cys Ser Ser Asn Ile Thr Gly Leu Leu Leu Arg Arg         405                 410                 415 GAT GGT GGA AGT AAC ACC AGT GAC AAC CAG ACT GAG ACC 1285 Asp Gly Gly Ser Asn Thr Ser Asp Asn Gln Thr Glu Thr                 420                 425 TTT AGA CCT GGG GGA GGA GAT ATG AGG GAC AAG TGG AGA 1324 Phe Arg Pro Gly Gly Gly Asp Met Arg Asp Lys Trp Arg     430                 435                 440 AGT GAA TTA TAT AAA TAT AAA GTA GTA AGA ATT GAA CCA 1363 Ser Glu Leu Tyr Lys Tyr Lys Val Val Arg Ile Glu Pro             445                 450 TTA GGA GTA GCA CCC ACC CAG GCA AAG AGA AGA GTG GTG 1402 Leu Gly Val Ala Pro Thr Gln Ala Lys Arg Arg Val Val 455                 460                 465 CAA AGA GAA AAA AGA GCA GTG GGG ATA GGA GCT ATG TTC 1441 Gln Arg Glu Lys Arg Ala Val Gly Ile Gly Ala Met Phe         470                 475                 480 CTT AGG TTC TTA GGA GAT AAA GCT TCT AGA GTC 1474 Leu Arg Phe Leu Gly Asp Lys Ala Ser Arg Val                 485                 490 491 CLONE C15.2     CTC GAG GTA CCT GTA TGG AAA GAA GCA ACT ACC ACT 36     Leu Glu Val Pro Val Trp Lys Glu Ala Thr Thr Thr       1               5                  10 CTA TTT TGT GCA TCA GAT GCT AAA GCA TAT AAT ACA GAG 75 Leu Phe Cys Ala Ser Asp Ala Lys Ala Tyr Asn Thr Glu          15                  20                  25 AAA CAT AAT GTT TGG GCC ACA CAC GCC TGT GTA CCC ACA 114 Lys His Asn Val Trp Ala Thr His Ala Cys Val Pro Thr                  30                  35 GAT CCC AAC CCA CAA GAA GTA GTA TTG GGA AAT GTG ACA 153 Asp Pro Asn Pro Gln Glu Val Val Leu Gly Asn Val Thr      40                  45                  50 GAA AAT TTT AAC ATG TGG AAA AAT AAC ATG GTA GAA CAA 192 Glu Asn Phe Asn Met Trp Lys Asn Asn Met Val Glu Gln              55                  60 ATG CAT GAA GAT ATA ATC AGT TTA TGG GAT CAA AGT CTA 231 Met His Glu Asp Ile Ile Ser Leu Trp Asp Gln Ser Leu  65                  70                  75 AAG CCA TGT GTA AAA TTA ACC CCA CTC TGT GTT ACT TTA 270 Lys Pro Cys Val Lys Leu Thr Pro Leu Cys Val Thr Leu          80                  85                  90 AAT TGC ACT GAT GAT TTA GGG AAT GCT ACT AAT ACC AAT 309 Asn Cys Thr Asp Asp Leu Gly Asn Ala Thr Asn Thr Asn                  95                 100 AGT AGT GCC ACT ACC AAT AGT AGT AGT TGG GAA GAA ATG 348 Ser Ser Ala Thr Thr Asn Ser Ser Ser Trp Glu Glu Met     105                 110                 115 AAG GGG GAA ATG AAA AGA TGC TCT TTC AAT ATC ACC ACA 387 Lys Gly Glu Met Lys Arg Cys Ser Phe Asn Ile Thr Thr             120                 125 AGC ATA AGA GAT AAG ATT AAG AAA GAA CAT GCA CTT TTC 426 Ser Ile Arg Asp Lys Ile Lys Lys Glu His Ala Leu Phe 130                 135                 140 TAT AGA CTT GAT GTA GTA CCA ATA GAT AAT GAT AAT ACC 465 Tyr Arg Leu Asp Val Val Pro Ile Asp Asn Asp Asn Thr          145                  150                155 ACA TAT AGG TTG ATA AAT TGT AAT ACC TCA GTC ATT ACA 504 Thr Tyr Arg Leu Ile Asn Cys Asn Thr Ser Val Ile Thr                 160                 165 GAG GCC TGT CGA AAG GTA TCA TTT GAG CCA ATT CCC ATA 543 Gln Ala Cys Pro Lys Val Ser Phe Glu Pro Ile Pro Ile     170                 175                 180 CAT TTT TGT GCC CGG GCT GGT TTT GCG ATT CTA AAG TGT 582 His Phe Cys Ala Pro Ala Gly Phe Ala Ile Leu Lys Cys             185                 190 AAT AAT AAG ACG TTC GAG GGA AAA GGA CCA TGT AAA AAT 621 Asn Asn Lys Thr Phe Glu Gly Lys Gly Pro Cys Lys Asn 195                 200                 205 GTC AGT ACA GTA CAA TGC ACA CAT GGA ATT AGG CCA GTA 660 Val Ser Thr Val Gln Cys Thr His Gly Ile Arg Pro Val         210                 215                 220 GTG TGA ACT GAA CTG CTG TTA AAT GGC AGT CTA GCA GAA 699 Val Ser Thr Gln Leu Leu Leu Asn Gly Ser Leu Ala Glu                 225                 230 GAA GAG GTA ATA ATT AGA TCT GAG AAT ATC ACA GAG AAT 738 Glu Glu Val Ile Ile Arg Ser Asp Asn Ile Thr Asp Asn     235                 240                 245 ACT AAA AGG ATT ATA GTA GAG GTA AAG GAA TGT GTA GTA 777 Thr Lys Thr Ile Ile Val Gln Leu Asn Glu Ser Val Val             250                 255 ATT AAT TGT AGA AGA CCC AAC AAC AAT ACA AGA AAA AGT 816 Ile Asn Cys Thr Arg Pro Asn Asn Asn Thr Arg Lys Ser 260                 265                 270 ATA CAT ATA GGA CGA GGG AGT GGA TTT TTT GCA ACA GGA 855 Ile His Ile Gly Pro Gly Ser Ala Phe Phe Ala Thr Gly         275                 280                 285 GAA ATA ATA GGA GAT ATA AGA CAA GCA GAG TGT AAC CTT 894 Glu Ile Ile Gly Asp Ile Arg Gln Ala His Cys Asn Leu                 290                 295 AGT AGA ACA CAA TGG AAT AAC ACT TTA GGA AAG ATA GTG 933 Ser Arg Thr Gln Trp Asn Asn Thr Leu Gly Lys Ile Val     300                 305                 310 ATA AAA TTA AGA GAA CAA TTT AGA AAA GAA TTT GGA GAA 972 Ile Lys Leu Arg Glu Gln Phe Arg Lys Gln Phe Gly Glu             315                 320 AAA ACA ATA GTC TTT AAT CGA TCC TGA GGA GGG GAG CCG 1011 Lys Thr Ile Val Phe Asn Arg Ser Ser Gly Gly Asp Pro 325                 330                 335 GAA ATT GGA ATG GAG AGT TTT AAT TGT GGA GGG GAA TTT 1050 Glu Ile Ala Met His Ser Phe Asn Cys Gly Gly Glu Phe         340                 345                 350 TTC TAG TGT AAG AGA ACA GGA GTG TTT AAT AGT AGG TGG 1089 Phe Tyr Gys Asn Thr Thr Ala Leu Phe Asn Ser Thr Trp                 355                 360 AAT GTT ACT AAA GGG TTG AAT AAC AGT GAA GGA AAT AGG 1128 Asn Val Thr Lys Gly Leu Asn Asn Thr Glu Gly Asn Ser     365                 370                 375 ACA GGA GAT GAA AAT ATC ATA CTC GGA TGT AGA ATA AAA 1167 Thr Gly Asp Glu Asn Ile Ile Leu Pro Gys Arg Ile Lys             380                 385 CAA ATT ATA AAG ATG TGG GAG GAA GTA GGA AAA GGA ATG 1206 Gln Ile Ile Asn Met Trp Gln Glu Val Gly Lys Ala Met 390                 395                 400 TAT GGG GGT CCC ATC AGT GGA GAA ATT AGA TGT TGA TGA 1245 Tyr Ala Pro Pro Ile Ser Gly Gln Ile Arg Gys Ser Ser         405                 410                 415 AAG ATT AGA GGG GTG GTA CTA ACA AGA GAT GGT GGT AGT 1284 Asn Ile Thr Gly Leu Leu Leu Thr Arg Asp Gly Gly Ser                 420                 425 AAG AAC GAG AGC ATC ACC ACC GAG GTC TTC AGA CCT GGA 1323 Lys Asn Glu Ser Ile Thr Thr Glu Val Phe Arg Pro Gly     430                 435                 440 GGA GGA GAT ATG AGG GAC AAT TGG AGA AGT GAA TTA TAT 1362 Gly Gly Asp Met Arg Asp Asn Trp Arg Ser Glu Leu Tyr             445                 450 AAA TAT AAA GTA GTA AAA ATT GAA CCA TTA GGA GTA GCG 1401 Lys Tyr Lys Val Val Lys Ile Glu Pro Leu Gly Val Ala 455                 460                 465 CCC ACC AAG GCA AAG AGA AGA GTG GTG CAG AGA GAA AAA 1440 Pro Thr Lys Ala Lys Arg Arg Val Val Gln Arg Glu Lys         470                 475                 480 AGA GCA GTG GGA ACA ATA GGA GCT ATG TTC CTT GGG TTC 1479 Arg Ala Val Gly Thr Ile Gly Ala Met Phe Leu Gly Phe                 485                 490 TTG GGA GCA TAA AGC TTC TAG ACT CGA CCT GCA 1512 Leu Gly Ala Xaa Ser Phe Xaa Ser Arg Pro Ala     495                 500             504 CLONE C15.3     CTC GAG GTA CCT GTC TGG AAA GAA GCA ACT ACC ACT 36     Leu Glu Val Pro Val Trp Lys Glu Ala Thr Thr Thr       1               5                  10 CTA TTT TGT GCA TCA CAT GCT AAA GCA TAT AAT ACA GAG 75 Leu Phe Cys Ala Ser Asp Ala Lys Ala Tyr Asn Thr Glu          15                  20                  25 AAA CAT AAT GTT TGG GCC ACA CAC GCC TCT GTA CCC ACA 114 Lys His Asn Val Trp Ala Thr His Ala Cys Val Pro Thr                  30                  35 GAT CCC AAC CCA CAA GAA CTA GTA TTG GGA AAT GTG ACA 153 Asp Pro Asn Pro Gln Glu Val Val Leu Gly Asn Val Thr      40                  45                  50 GAA AAT TTT AAC ATG TCG AAA AAT AAC ATG GTA GAA CAA 192 Glu Asn Phe Asn Met Trp Lys Asn Asn Met Val Glu Gln              55                  60 ATG CAT GAA GAT ATA ATC AGT TTA TGG CAT CAA AGT CTA 231  Met His Glu Asp Ile Ile Ser Leu Trp Asp Gln Ser Leu   65                  70                  75 AAG CCA TGT CTA AAA TTA ACC CCA CTC TGT GTT ACT TTA 270 Lys Pro Cys Val Lys Leu Thr Pro Leu Cys Val Thr Leu          80                  85                  90 AAT TGC ACT GAT GAT TTA CCC AAT GCT ACT AAT ACC AAT 309 Asn Cys Thr Asp Asp Leu Gly Asn Ala Thr Asn Thr Asn                  95                   100 AGC ACT GCC ACT ACC AAT AGT ACT AGT TGC GAA GAA ATG 348 Ser Ser Ala Thr Thr Asn Ser Ser Ser Trp Glu Glu Met     105                 110                     115 AAG GGG GAA ATG AAA AGG TGC TCT TTC AAT ATC ACC ACA 387 Lys Gly Glu Met Lys Arg Cys Ser Phe Asn Ile Thr Thr             120                 125 AGC ATA AGA CAT AAC ATT AAG AAA CAA CAT GCA CTT TTC 426 Ser Ile Arg Asp Lys Ile Lys Lys Glu His Ala Leu Phe 130                 135                 140 TAT AGA CTT GAT CTA GTA CCA ATA CAT AAT CAT AAT ACC 465 Tyr Arg Leu Asp Val Val Pro Ile Asp Asn Asp Asn Thr         145                 150                 155 ACA TAT AGG TTG ATA AAT TGT AAT ACC TCA GTC ATT ACA 504 Thr Tyr Arg Leu Ile Asn Cys Asn Thr Ser Val Ile Thr                 160                 165 CAG CCC TGT CCA AAG GTA TCA TTT GAG CCA ATT CCC ATA 543 Gln Ala Cys Pro Lys Val Ser Phe Clu Pro Ile Pro Ile     170                 175                 180 CAT TTT TCT CCC CCC CCT CCT TTT CCC ATT CTA AAG TCT 582 His Phe Cys Ala Pro Ala Gly Phe Ala Ile Leu Lys Cys             185                 190 AAT AAT AAG ACG TTC GAG GGA AAA GGA CCA TGT AAA AAT 621 Asn Asn Lys Thr Phe Glu Gly Lys Gly Pro Cys Lys Asn 195                 200                 205 GTC AGT ACA GTA CAA TGC ACA CAT GGA ATT AGG CCA GTA 660 Val Ser Thr Val Gln Cys Thr His Gly Ile Arg Pro Val         210                 215                 220 GTG TCA ACT CAA CTG CTG TTA AAT GGC AGT CTA GCA GAA 699 Val Ser Thr Gln Leu Leu Leu Asn Gly Ser Leu Ala Glu                 225                 230 GAA GAG GTA ATA ATT AGA TCT GGC AAT ATC ACA GAC AAT 738 Glu Glu Val Ile Ile Arg Ser Gly Asn Ile Thr Asp Asn     235                 240                 245 ACT AAA ACC ATT ATA GTA CAG CTA AAC GAA TCT GTA GTA 777 Thr Lys Thr Ile Ile Val Gln Leu Asn Glu Ser Val Val             250                 255 ATT AAT TGT ACA AGA TCC AAC AAC AAT ACA AGA AAA AGT 816 Ile Asn Cys Thr Arg Ser Asn Asn Asn Thr Arg Lys Ser 260                 265                 270 ATA CAT ATA GGA CCA GGG AGT GCA TTT TTT GCA ACA GGA 855 Ile His Ile Gly Pro Gly Ser Ala Phe Phe Ala Thr Gly         275                 280                 285 GAA ATA ATA GGA GAT ATA AGA CAA GCA CAC TGT AAC CTT 894 Glu Ile Ile Gly Asp Ile Arg Gln Ala His Cys Asn Leu                 290                 295 AGT AGA ACA CAA TGG AAT AAC ACT TTA GGA AAG ATA GTC 933 Ser Arg Thr Gln Trp Asn Asn Thr Leu Gly Lys Ile Val     300                 305                 310 ATA AAA TTA AGA GAA CAA TTT AGA AAA CAA TTT GGA GAA 972 Ile Lys Leu Arg Glu Gln Phe Arg Lys Gln Phe Gly Glu             315                 320 AAA ACA ATA GTC TTT AAT CGA TCC TCA GGA GGG GAC CCG 1011 Lys Thr Ile Val Phe Asn Arg Ser Ser Gly Gly Asp Pro 325                 330                 335 GAA ATT GCA ATG CAC AGT TTT AAT TGT GGA GGG GAA TTT 1050 Glu Ile Ala Met His Ser Phe Asn Cys Gly Gly Glu Phe         340                 345                 350 TTC TAC TGT AAC ACA ACA GCA CTG TTT AAT AGT ACC TGG 1089 Phe Tyr Cys Asn Thr Thr Ala Leu Phe Asn Ser Thr Trp                 355                 360 AAT GTT ACT AAA COG TTG AAT AAC ACT GAA GGA AAT AGC 1128 Asn Val Thr Lys Gly Leu Asn Asn Thr Glu Gly Asn Ser     365                 370                 375 ACA GGG GAT GAA AAT ATC ATA CTC CCA TGT AGA ATA AAA 1167 Thr Gly Asp Glu Asn Ile Ile Leu Pro Cys Arg Ile Lys             380                 385 CAA ATT ATA AAC ATG TGG CAG GAA GTA GGA AAA GCA ATG 1206 Gln Ile Ile Asn Met Trp Gln Glu Val Gly Lys Ala Met 390                 395                 400 TAT GCC CCT CCC ATC AGT GGA CAA ATT AGA TGT TCA TCA 1245 Tyr Ala Pro Pro Ile Ser Gly Gln Ile Arg Cys Ser Ser         405                 410                 415 AAT ATT ACA COO CTG CTA CTA ACA AGA GAT GGT GGT AGT 1284 Asn Ile Thr Gly Leu Leu Leu Thr Arg Asp Gly Gly Ser                 420                 425 AAG AAC GAG ACC ATC ACC ACC GAG GTC TTC AGA CCT GGA 1323.. Lys Asn Glu Ser Ile Thr Thr Glu Val Phe Arg Pro Gly     430                 435                 440 GGA CGA GAT ATG AGG GAC AAT TGG AGA AGT GAA TTA TAT 1362 Gly Gly Asp Met Arg Asp Asn Trp Arg Ser Glu Leu Tyr             445             450 AAA TAT AAA GTA GTA AAA ATT GAA CCA TTA GGA GTA GCG 1401 Lys Tyr Lys Val Val Lys Ile Glu Pro Leu Gly Val Ala 455                 460                 465 CCC ACC AAG GCA AAG AGA AGA GTG GTG CAG AGA GAA AAA 1440 Pro Thr Lys Ala Lys Arg Arg Val Val Gln Arg Glu Lys         470                 475                 480 AGA GCA GTG GGA ACA ATA GGA GCT ATG TTC CTT GGG TTC 1479 Arg Ala Val Gly Thr Ile Gly Ala Met Phe Leu Gly Phe                 485                 490 TTA GGA GCA TAA AGC TTC TAG A 1501 Leu Gly Ala Xaa Ser Phe Xaa     495                 500 CLONE C7.2 GG  GAA TTC GGA TCC GGG GTA CCT GTG TGG AAG GAA GCA 38     Glu Phe Gly Ser Gly Val Pro Val Trp Lys Glu Ala       1               5                  10 ACC ACC ACT CTA TTC TGT GCA TCA GAT GCT AGA GCA TAT 77 Thr Thr Thr Leu Phe Cys Ala Ser Asp Ala Arg Ala Tyr          15                  20                  25 GAC ACA GAG GTA CAT AAT GTT TGG GCC ACA CAT GCC TGT 116 Asp Thr Glu Val His Asn Val Trp Ala Thr His Ala Cys                  30                 35 GTA CCC ACA GAC CCT AGT CCA CAA GAA GTA GTT TTG GAA 155 Val Pro Thr Asp Pro Ser Pro Gln Glu Val Val Leu Glu      40                  45                  50 AAT GTG ACA GAA AAT TTT AAC ATG TGG AAA AAT AAC ATG 194 Asn Val Thr Glu Asn Phe Asn Met Trp Lys Asn Asn Met              55                  60 GTA GAA CAA ATG CAT GAG GAT ATA ATT AGT TTA TGG GAT 233 Val Glu Gln Met His Glu Asp Ile Ile Ser Leu Trp Asp  65                  70                  75 CAA AGC TTA AAG CCA TGT GTA AAA TTA ACC CCA CTC TGT 272 Gln Ser Leu Lys Pro Cys Val Lys Leu Thr Pro Leu Cys          80                  85                  90 GTT ACT TTA AAT TGC AGT GAT TAT AGG AAT GCT ACT GAT 311 Val Thr Leu Asn Cys Ser Asp Tyr Arg Asn Ala Thr Asp                  95                 100 TAT AAG AAT GCT ACT GAT ACC ACT AGT AGT AAC GAG GGA 350 Tyr Lys Asn Ala Thr Asp Thr Thr Ser Ser Asn Glu Gly     105                 110                 115 AAG ATG GAG AGA GGA GAA ATA AAA AAC TGC TCT TTC AAT 389 Lys Met Glu Arg Gly Glu Ile Lys Asn Cys Ser Phe Asn             120                 125 ATT ACC ACA AGC ATA AAA AAT AAG ATG CAG AAA GAA TAT 428 Ile Thr Thr Ser Ile Lys Asn Lys Met Gln Lys Glu Tyr 130                 135                 140 GCA CTT TTC TAT AAA CTT GAT ATA GTA CCA ATA GAT AAT 467 Ala Leu Phe Tyr Lys Leu Asp Ile Val Pro Ile Asp Asn         145                 150                 155 ACA AGC TAT ACA TTG ATA AGT TGT AAC ACC TCA GTC ATT 506 Thr Ser Tyr Thr Leu Ile Ser Cys Asn Thr Ser Val Ile                 160                      165 ACA CAG GCC TGT CCA AAG GTA TCC TTT GAA CCA ACT CCC 545 Thr Gln Ala Cys Pro Lys Val Ser Phe Glu Pro Thr Pro     170                 175                 180 ATA CAT TAT TGT GCT CCG GCT GGT TTT GCG ATT CTA AAG 584 Ile His Tyr Cys Ala Pro Ala Gly Phe Ala Ile Leu Lys             185                 190 TGT AAT GAT AAG AAG TTC AGT GGA AAA GGA GAA TGT AAA 623 Cys Asn Asp Lys Lys Phe Ser Gly Lys Gly Glu Cys Lys 195                 200                 205 AAT GTC AGC ACA GTA CAA TGT ACA CAT GGA ATT AGG CCA 662 Asn Val Ser Thr Val Gln Cys Thr His Gly Ile Arg Pro         210                 215                 220 GTA GTA TCA ACT CAA CTG CTG TTA AAT GGC AGT CTA GCA 701 Val Val Ser Thr Gln Leu Leu Leu Asn Gly Ser Leu Ala                 225                 230 GAA GAA GAG GTG GTA ATT AGA TCT GAC AAT TTC ATA GAC 740 Glu Glu Glu Val Val Ile Arg Ser Asp Asn Phe Ile Asp     235                 240                 245 AAT ACT AAA ACC ATA ATA GTA CAG CTG AAA GAA TCT GTA 779 Asn Thr Lys Thr Ile Ile Val Gln Leu Lys Glu Ser Val             250                 255 GAA ATT AAT TGT ATA AGA CCC AAC AAT AAT ACA AGA AAA 818 Glu Ile Asn Cys Ile Arg Pro Asn Asn Asn Thr Arg Lys 260                 265                 270 GGT ATA CAT ATA GGA CCA GGG AGA GCA TGG TAT GCA ACA 857 Gly Ile His Ile Gly Pro Gly Arg Ala Trp Tyr Ala Thr         275                 280                 285 GGA GAA ATA GTA GGA GAT ATA AGA AAG GCA TAT TGT AAC 896 Gly Glu Ile Val Gly Asp Ile Arg Lys Ala Tyr Cys Asn                 290                 295 ATT AGT AGA ACA AAA TGG AAT AAC ACT TTA ATA CAG ATA 935 Ile Ser Arg Thr Lys Trp Asn Asn Thr Leu Ile Gln Ile     300                 305                 310 GCT AAC AAA TTA AAA GAA AAA TAT AAT ACA ACA ATA AGC 974 Ala Asn Lys Leu Lys Glu Lys Tyr Asn Thr Thr Ile Ser             315                 320 TTT AAT CGA TCC TCA GGA GGG GAC CCA GAA ATT GTA ACG 1013 Phe Asn Arg Ser Ser Gly Gly Asp Pro Glu Ile Val Thr 325                 330                 335 CAT AGT TTT AAT TGT GGA GGG GAG TTT TTC TAC TGT GAT 1052 His Ser Phe Asn Cys Gly Gly Glu Phe Phe Tyr Cys Asp         340                 345                 350 TCA ACA CAA CTG TTT AAT AGT ACT TGG AAT TTA AAT GGT 1091 Ser Thr Gln Leu Phe Asn Ser Thr Trp Asn Leu Asn Gly                 355                 360 ACT TGG AAT TTT ACT GCA GGG TCA AAT GAA ACT GAA GGC 1130 Thr Trp Asn Phe Thr Ala Gly Ser Asn Glu Thr Glu Gly     365                 370                 375 AAT ATC ACA CTC CCA TGC AGA ATA AAA CAA ATT ATA AAC 1169 Asn Ile Thr Leu Pro Cys Arg Ile Lys Gln Ile Ile Asn             380                 385 AGG TGG CAG GAA GTA GGG AAA GCA ATG TAT GCC CCT CCC 1208 Arg Trp Gln Glu Val Gly Lys Ala Met Tyr Ala Pro Pro 390                 395                 400 ATC AGT GGA CAA ATA AAA TGC TCA TCA AAC ATT ACA GGG 1247 Ile Ser Gly Gln Ile Lys Cys Ser Ser Asn Ile Thr Gly         405                 410                 415 ATG ATA TTA ACA AGG GAT GGT GGT AAC GAG AAC AAT AAT 1286 Met Ile Leu Thr Arg Asp Gly Gly Asn Glu Asn Asn Asn                 420                 425 GAG AGC AGT ACT ACT GAG ACC TTC AGA CCG GGA GGA GGA 1325 Glu Ser Ser Thr Thr Glu Thr Phe Arg Pro Gly Gly Gly     430                 435                 440 GAT ATG AGG AAC AAT TGG AGA AGT GAA TTA TAT AAA TAT 1364 Asp Met Arg Asn Asn Trp Arg Ser Glu Leu Tyr Lys Tyr             445                 450 AAA GTA GTA AAA ATT GAA CCA TTA GGA GTA GCA CCC ACC 1403 Lys Val Val Lys Ile Glu Pro Leu Gly Val Ala Pro Thr 455                 460                 465 AAG GCA AAG AGA AGA GTG GTG CAG AGA GAA AAA AGA GCA 1442 Lys Ala Lys Arg Arg Val Val Gln Arg Glu Lys Arg Ala         470                 475                 480 GTG GGA GCG CTA GGA GCT ATG TTC CTT GGG TTC TTA GGA 1481 Val Gly Ala Leu Gly Ala Met Phe Leu Gly Phe Leu Gly                 485                 490 GCA TAA AGC TTC TAG ACC GAC TCT AGA GGA TCC 1514 Ala Xaa Ser Phe Xaa Thr Asp Ser Arg Gly Ser     495                 500             504 CLONE C7.10 G   GTA CCT GTG TGG AAG GAA GCA ACC ACC ACT CTA TTC 37     Val Pro Val Trp Lys Glu Ala Thr Thr Thr Leu Phe       1               5                 10 TGT GCA TCA GAT GCT AGA GCA TAT GAC ACA GAG GTA CAT 76 Cys Ala Ser Asp Ala Arg Ala Tyr Asp Thr Glu Val His          15                  20                  25 AAT GTT TGG GCC ACA CAT GCC TGT GTA CCC ACA GAC CCT 115 Asn Val Trp Ala Thr His Ala Cys Val Pro Thr Asp Pro                  30                  35 AGT CCA CAA GAA GTA TTT TTG GGA AAT GTG ACA GAA AAT 154 Ser Pro Gln Glu Val Phe Leu Gly Asn Val Thr Glu Asn     40                   45                  50 TTT AAT ATG TGG AAA AAT AAC ATG GTA GAA CAA ATG TAT 193 Phe Asn Met Trp Lys Asn Asn Met Val Glu Gln Met Tyr              55                  60 GAG GAT ATA ATT AGT TTA TGG GAT CAA AGC TTA AAG CCA 232 Glu Asp Ile Ile Ser Leu Trp Asp Gln Ser Leu Lys Pro  65                  70                  75 TGT GTA AAA TTA ACC CCA CTC TGT GTT ACT TTA AAT TGC 271 Cys Val Lys Leu Thr Pro Leu Cys Val Thr Leu Asn Cys          80                  85                  90 AGT GAT TAT AGG AAT GCT ACT GAT TAT AAG AAT GCT ACT 310 Ser Asp Tyr Arg Asn Ala Thr Asp Tyr Lys Asn Ala Thr                  95                 100 GAT ACC ACT AGT AGT AAC GAG GGA AAG ATG GAG AGA GGA 349 Asp Thr Thr Ser Ser Asn Glu Gly Lys Met Glu Arg Gly     105                 110                 115 GAA ATA AAA AAC TGC TCT TTC AAT ATC ACC ACA AGC ATA 388 Glu Ile Lys Asn Cys Ser Phe Asn Ile Thr Thr Ser Ile             120                 125 AAA AAT AAG ATG CAG AAA GAA TAT GCA CTT TTC TAT AAA 427 Lys Asn Lys Met Gln Lys Glu Tyr Ala Leu Phe Tyr Lys 130                 135                 140 CTT AAT ATA GTA CCA ATA GAT AAT ACA AGC TAT ACA TTG 466 Leu Asn Ile Val Pro Ile Asp Asn Thr Ser Tyr Thr Leu         145                 150                 155 ATA AGT TGT AAC ACC TCA GTC ATT ACA CAG GCC TGT CCA 505 Ile Ser Cys Asn Thr Ser Val Ile Thr Gln Ala Cys Pro                 160                 165 AAG GTA TCC TTT GAA CCA ATT CCC ATA CAT TAT TGT GCT 544 Lys Val Ser Phe Glu Pro Ile Pro Ile His Tyr Cys Ala     170                 175                 180 CCG GCT GGT TTT GCG ATT CTA AAG TGT AAT GAT AAG AAG 583 Pro Ala Gly Phe Ala Ile Leu Lys Cys Asn Asp Lys Lys             185                 190 TTC AGT GGA AAA GGA GAA TGT AAA AAT GTC AGC ACA GTA 622 Phe Ser Gly Lys Gly Glu Cys Lys Asn Val Ser Thr Val 195                 200                 205 CAA TGT ACA CAT GGA ATT AGG CCA GTA GTA TCA ACT CAA 661 Gln Cys Thr His Gly Ile Arg Pro Val Val Ser Thr Gln         210                 215                 220 CTG CTG TTA AAT GGC AGT CTA GCA GAA GAA GAG GTG GTA 700 Leu Leu Leu Asn Gly Ser Leu Ala Glu Glu Glu Val Val                 225                 230 ATT AGA TCT GAC AAT TTC ACA GAC AAT ACT AAA ACC ATA 739 Ile Arg Ser Asp Asn Phe Thr Asp Asn Thr Lys Thr Ile     235                 240                 245 ATA GTA CAG CTG AAA GAA TCT GTA GAA ATT AAT TGT ATA 778 Ile Val Gln Leu Lys Glu Ser Val Glu Ile Asn Cys Ile             250                 255 AGA CCC AAC AAT AAT ACA AGA AAA GGT ATA CAT ATA GGA 817 Arg Pro Asn Asn Asn Thr Arg Lys Gly Ile His Ile Gly 260                 265                 270 CCA GGG AGA GCA TGG TAT GCA ACA GGA GAA ATA GTA GGA 856 Pro Gly Arg Ala Trp Tyr Ala Thr Gly Glu Ile Val Gly         275                 280                 285 CAT ATA AGA CAG GCA TAT TGT AAC ATT AGT AGA ACA AAA 895 Asp Ile Arg Gln Ala Tyr Cys Asn Ile Ser Arg Thr Lys                 290                 295 TGG PAT AAC ACT TTA ATA CAG ATA GCT AAC AAA TTA AAA 934 Trp Asn Asn Thr Leu Ile Gln Ile Ala Asn Lys Leu Lys     300                 305                 310 GAA AAA TAT AAT ACA ACA ATA AGC TTT PAT CGA TCC TCA 973 Glu Lys Tyr Asn Thr Thr Ile Ser Phe Asn Arg Ser Ser             315                 320 GGA GGC GAC CCA CAA ATT GTA ACC CAT AGT TTT PAT TGT 1012 Gly Gly Asp Pro Clu Ile Val Thr His Ser Phe Asn Cys 325                 330                 335 GGA GGG GPA TTT TTC TAC TCT PAT TCA ACA CPA CTG TTT 1051 Gly Gly Clu Phe Phe Tyr Cys Asn Ser Thr Gln Leu Phe         340                 345                 350 PAT AGT ACT TGG PAT TTA PAT COT ACT TGG PAT TTT ACT 1090 Asn Ser Thr Trp Asn Leu Asn Gly Thr Trp Asn Phe Thr                 355                 360 GCA GGG TCA PAT GAA ACT CPA CCC PAT ATC ACA CTC CCA 1129 Ala Gly Ser Asn Glu Thr Glu Gly Asn Ile Thr Leu Pro     365                 370                 375 TGC AGA ATA AAA CPA ATT ATA PAC AGG TGG CAC GPA GTA 1168 Cys Arg Ile Lys Gln Ile Ile Asn Arg Trp Gln Glu Val             380                 385 GGA AAA GCA ATG TAT CCC CCT CCC ATC AGT GGA CPA ATA 1207 Gly Lys Ala Met Tyr Ala Pro Pro Ile Ser Gly Gln Ile 390                 395                 400 AGA TGC TCA TCA PAC ATT ACA CCC ATG ATA TTA ACA AGG 1246 Arg Cys Ser Ser Asn Ile Thr Gly Met Ile Leu Thr Arg         405                 410                 415 CAT GGT COT PAC GAG PAC PAT PAT GAG AGC ACT ACT ACT 1285 Asp Gly Gly Asn Glu Asn Asn Asn Glu Ser Ser Thr Thr                 420                 425 GAG ACC TTC ACA CCC GGA GGA GGA CAT ATG ACG PAC PAT 1324 Glu Thr Phe Arg Pro Gly Gly Gly Asp Met Arg Asn Asn     430                 435                 440 TCG ACA ACT CPA TTA TAT PAA TAT PAA CTA GTA AAA ATT 1363 Trp Arg Ser Glu Leu Tyr Lys Tyr Lys Val Val Lys Ile             445                 450 GAG CCA TTA GGA GTA GCA CCC ACC CAC TCT AGA GGA TCC 1402 Glu Pro Leu Gly Val Ala Pro Thr Asp Ser Arg Gly Ser 455                 460                 465 TCT ACA 1408 Ser Arg     469 CLONE C11.5     GAG GTA CCT GTG TCC PAA CPA GCA ACC ACT ACT CTA 36     Glu Val Pro Val Trp Lys Glu Ala Thr Thr Thr Leu       1               5                  10 TTT TGT GCA TCA CAT CCT AAA GCA TAT GAC ACA COG GTG 75 Phe Cys Ala Ser Asp Ala Lys Ala Tyr Asp Thr Gly Val          15                  20                  25 CAT PAT GTT TGG GCC ACA CAT CCC TCT CTA CCC ACA GAC 114 His Asn Val Trp Ala Thr His Ala Cys Val Pro Thr Asp                  30                  35 CCC PAC CCA CPA CPA ATA CPA TTG CTA PAT GTG ACA CPA 153 Pro Asn Pro Gln Glu Ile Glu Leu Val Asn Val Thr Glu      40                  45                  50 CAT TTT AAC ATG TCC AAA PAT AAA ATC GTA GAC CAG ATG 192 Asp Phe Asn Met Trp Lys Asn Lys Met Val Asp Gln Met              55                  60 CAT GAG GAT ATA ATC AGT TTA TGG GAT GAA AGC CTA AAG 231 His Glu Asp Ile Ile Ser Leu Trp Asp Glu Ser Leu Lys  65                  70                  75 CCA TGT GTA AAG TTA ACC CCA CTT TGT GTT ACT CTA AAC 270 Pro Cys Val Lys Leu Thr Pro Leu Cys Val Thr Leu Asn          80                  85                  90 TGC AGT GAT GTG AAC AAT TCC ACA AAT CCT AAT GAT ACT 309 Cys Ser Asp Val Asn Asn Ser Thr Asn Pro Asn Asp Thr                  95                 100 AAT ACT AAT TCC ACT AAT ACT ACT TCC TCT ACT CCT ACG 348 Asn Thr Asn Ser Thr Asn Thr Thr Ser Ser Thr Pro Thr     105                 110                 115 GCC ACT ACT AGT AGC GAG GAA AAG ATG GAG AAG GGA GAA 387 Ala Thr Thr Ser Ser Glu Glu Lys Met Glu Lys Gly Glu             120                 125 ATA AAA AAC TGC TCT TTC AAT ATC ACC ACA CAC ATG AAA 426 Ile Lys Asn Cys Ser Phe Asn Ile Thr Thr His Met Lys 130                 135                 140 GAT AAG GCA CAG AAA GAA TAT GCA CTT TTT TAT AAA CTT 465 Asp Lys Ala Gln Lys Glu Tyr Ala Leu Phe Tyr Lys Leu         145                 150                 155 GAT ATA GTA CCA ATA GAT GAT AAT AAT GCC AGC TAT AGG 504 Asp Ile Val Pro Ile Asp Asp Asn Asn Ala Ser Tyr Arg                 160                 165 TTG ATA AGT TGT AAT ACC TCA GAC ATT ACA CAG GCC TGT 543 Leu Ile Ser Cys Asn Thr Ser Asp Ile Thr Gln Ala Cys     170                 175                 180 CCA AAG GTG ACC TTT GAG CCA ATT CCC ATA CAT TAT TGT 582 Pro Lys Val Thr Phe Glu Pro Ile Pro Ile His Tyr Cys             185                 190 GCC CCG GCT GGT TTT GCG ATT CTA AAG TGT AAA GAT AAG 621 Ala Pro Ala Gly Phe Ala Ile Leu Lys Cys Lys Asp Lys 195                 200                 205 AAG TTC AAT GGA ACA GGA CCA TGT TCA AAG GTC AGC ACA 660 Lys Phe Asn Gly Thr Gly Pro Cys Ser Lys Val Ser Thr         210                 215                 220 GTA CAA TGT ACA CAT GGA ATT AGG CCA GTA GTA TCA ACT 699 Val Gln Cys Thr His Gly Ile Arg Pro Val Val Ser Thr                 225                 230 CAA CTG TTG TTA AAT GGC AGT CTT GCA GAA GAA GAA GTA 738 Gln Leu Leu Leu Asn Gly Ser Leu Ala Glu Glu Glu Val     235                 240                 245 GTA ATT AGA TCT GTC AAT TTC ACA GAC AAT GCT AAA ATC 777 Val Ile Arg Ser Val Asn Phe Thr Asp Asn Ala Lys Ile             250                 255 ATA ATA GTA CAG CTG AAA GAA CCT GTA GCA ATT AAT TGT 816 Ile Ile Val Gln Leu Lys Glu Pro Val Ala Ile Asn Cys 260                 265                 270 ACA AGA CCC AAC AAC AAT ACA AGA AAA GGT ATA CAT CTA 855 Thr Arg Pro Asn Asn Asn Thr Arg Lys Gly Ile His Leu         275                 280                 285 GGA CCA GGG AGC ACA TTT TAT ACA ACA GGA GAA ATA ATA 894 Gly Pro Gly Ser Thr Phe Tyr Thr Thr Gly Glu Ile Ile                 290                 295 GGA GAC ATA AGA AAA GCA TAT TGC AAG ATT AGT AAA GAA 933 Gly Asp Ile Arg Lys Ala Tyr Cys Lys Ile Ser Lys Glu     300                 305                 310 AAA TGG AAT AAC ACT TTA AGA CAG GTA GTT AAA AAA TTA 972 Lys Trp Asn Asn Thr Leu Arg Gln Val Val Lys Lys Leu             315                 320 AGA GAA CAA TTT GGG AAT AAA ACA ATA ATT TTT AAT CGA 1011 Arg Glu Gln Phe Gly Asn Lys Thr Ile Ile Phe Asn Arg 325                 330                 335 TCC TCA GGA GGG GAC CCA GAA ATT GTA ATG CAC AGT TTT 1050 Ser Ser Gly Gly Asp Pro Glu Ile Val Met His Ser Phe         340                 345                 350 AAC TGT GGA GGG GAG TTT TTC TAC TGT AAT ACA ACA CAA 1089 Asn Cys Gly Gly Glu Phe Phe Tyr Cys Asn Thr Thr Gln                 355                 360 CTG TTT AAT AGT ACT TGG AAT AAT ACT GAA GGG ACA AAT 1128 Leu Phe Asn Ser Thr Trp Asn Asn Thr Glu Gly Thr Asn     365                 370                 375 AGC ACT GAA GGA AAT AGC ACA ATC ACA CTC CCA TGC AGA 1167 Ser Thr Glu Gly Asn Ser Thr Ile Thr Leu Pro Cys Arg             380                 385 ATA AAA CAA ATT ATA AAT ATG TGG CAG GAA GTA GGA AAA 1206 Ile Lys Gln Ile Ile Asn Met Trp Gln Glu Val Gly Lys 390                 395                 400 GCA ACG TAT GCC CCT CCC ATC AGA GGA CGA ATT AGA TGC 1245 Ala Thr Tyr Ala Pro Pro Ile Arg Gly Arg Ile Arg Cys         405                 410                 415 ATA TCA AAT ATT ACA GGA CTG CTA TTA ACA AGA GAT GGT 1284 Ile Ser Asn Ile Thr Gly Leu Leu Leu Thr Arg Asp Gly                 420                 425 GGT AGG AAT GTC ACA AAC AAT ACC GAA ACC TTC AGA CCT 1323 Gly Arg Asn Val Thr Asn Asn Thr Glu Thr Phe Arg Pro     430                 435                 440 GGA GGA GGA GAC ATG AGG GAC AAT TGG AGA AGT GAA TTA 1362 Gly Gly Gly Asp Met Arg Asp Asn Trp Arg Ser Glu Leu             445                 450 TAT AAA TAT AAA GTA GTA AAA GTT GAA CCA TTA GGA ATA 1401 Tyr Lys Tyr Lys Val Val Lys Val Glu Pro Leu Gly Ile 455                 460                 465 GCA CCC ACC AAG GCA AAG AGA AGA GTG GTG CAC AGA GAC 1440 Ala Pro Thr Lys Ala Lys Arg Arg Val Val His Arg Asp         470                 475                 480 AAA AGA GCA GCA CTA GGA GCC TTG TTC CTT GGG TTC TTA 1479 Lys Arg Ala Ala Leu Gly Ala Leu Phe Leu Gly Phe Leu                 485                 490 GGA GCA TAA AAG CTT CTA GA 1499 Gly Ala Xaa Lys Leu Leu      495             499 CLONE C11.7     GAG GTA CCT GTA TGG AAA GAA GCA ACC ACT ACT CTA 36     Glu Val Pro Val Trp Lys Glu Ala Thr Thr Thr Leu       1               5                  10 TTT TGT GCA TCA GAT GCT AAA GCA TAT GAC ACA GAG GTG 75 Phe Cys Ala Ser Asp Ala Lys Ala Tyr Asp Thr Glu Val          15                  20                  25 CAT AAT GTT TGG GCC ACA CAT GCC TGT GTA CCC ACA GAC 114 His Asn Val Trp Ala Thr His Ala Cys Val Pro Thr Asp                  30                  35 CCC AAC CCA CAA GAA ATA GAA TTG GTA AAT GTG ACA GAA 153 Pro Asn Pro Gln Glu Ile Glu Leu Val Asn Val Thr Glu      40                  45                  50 GAT TTT AAC ATG TGG AAA AAT AAA ATG GTA GAC CAG ATG 192 Asp Phe Asn Met Trp Lys Asn Lys Met Val Asp Gln Met              55                  60 CAT GAG GAT ATA ATC AGT TTA TGG GAT GAA AGC CTA AAG 231 His Glu Asp Ile Ile Ser Leu Trp Asp Glu Ser Leu Lys  65                  70                  75 CCA TGT GTA AAG TTA ACC CCA CTT TGT GTT ACT CTA AAC 270 Pro Cys Val Lys Leu Thr Pro Leu Cys Val Thr Leu Asn          80                  85                  90 TGC AGT GAT GTG AAC AAT TCC ACA AAT CCT AAT GAT ACT 309 Cys Ser Asp Val Asn Asn Ser Thr Asn Pro Asn Asp Thr                  95                 100 AAT ACT AAT TCC ACT AAT ACT ACT TCC TCT ACT CCT ACG 348 Asn Thr Asn Ser Thr Asn Thr Thr Ser Ser Thr Pro Thr     105                 110                 115 CCC ACT ACT AGT AGC GAG GAA AAG ATG GAG AAG GGA GAA 387 Ala Thr Thr Ser Ser Glu Glu Lys Met Glu Lys Gly Glu             120                 125 ATA AAA AAC TGC TCT TTC AAT ATC ACC ACA CAC ATG AAA 426 Ile Lys Asn Cys Ser Phe Asn Ile Thr Thr His Met Lys 130                 135                 140 GAT AAG GTA CAG AAA GAA TAT GCA CTT TTT TAT AAA CTT 465 Asp Lys Val Gln Lys Glu Tyr Ala Leu Phe Tyr Lys Leu         145                 150                 155 CAT ATA GTA CCA ATA GAT GAT AAT AAT ACC AGC TAT AGG 504 Asp Ile Val Pro Ile Asp Asp Asn Asn Thr Ser Tyr Arg                 160                 165 TTG ATA AGT TGT AAT ACC TCA GTC ATT ACA CAG GCC TGT 543 Leu Ile Ser Cys Asn Thr Ser Val Ile Thr Gln Ala Cys     170                 175                 180 CCA ATG GTG ACC TTT GAG CCA ATT CCC ATA CAT TAT TGT 582 Pro Met Val Thr Phe Glu Pro Ile Pro Ile His Tyr Cys             185                 190 GCC CCG GCT GGT TTT GCG ATT CTA AAG TGT AAA GAT AAG 621 Ala Pro Ala Gly Phe Ala Ile Leu Lys Cys Lys Asp Lys 195                 200                 205 AAC TTC AAT GGA ACA GGA CCA TGT TCA AAG GTC AGC ACA 660 Lys Phe Asn Gly Thr Gly Pro Cys Ser Lys Val Ser Thr         210                 215                 220 GTA CAA TGT ACA CAT GGA ATT AGG CCA GTA GTA TCA ACT 699 Val Gln Cys Thr His Gly Ile Arg Pro Val Val Ser Thr                 225                 230 CAA CTG TTG TTA AAT GGC AGT CTT GCA GAA GAA GAA GTA 738 Gln Leu Leu Leu Asn Gly Ser Leu Ala Glu Glu Glu Val     235                 240                 245 GTA ATT AGA TCT GTC AAT TTC ACA GAC AAT GCT AAA ATC 777 Val Ile Arg Ser Val Asn Phe Thr Asp Asn Ala Lys Ile             250                 255 ATA ATA GTA CAG CTG AAA GAA CCT GTA GCA ATT AAT TGT 816 Ile Ile Val Gln Leu Lys Glu Pro Val Ala Ile Asn Cys 260                 265                 270 ACA AGA CCC AAC AAC AAT ACA AGA AAA GGT ATA CAT CTA 855 Thr Arg Pro Asn Asn Asn Thr Arg Lys Gly Ile His Leu         275                 280                 285 GGA CCA GGG AGC ACA TTT TAT ACA ACA GGA GAA ATA ATA 894 Gly Pro Gly Ser Thr Phe Tyr Thr Thr Gly Glu Ile Ile                 290                 295 GGA GAC ATA AGA AAA GCA TAT TGC AAG ATT AGT AAA GAA 933 Gly Asp Ile Arg Lys Ala Tyr Cys Lys Ile Ser Lys Glu     300                 305                 310 AAA TGG AAT AAC ACT TTA AGA CAG GTA GTT AAA AAA TTA 972 Lys Trp Asn Asn Thr Leu Arg Gln Val Val Lys Lys Leu             315                 320 AGA GAA CAA TTT GGG AAT AAA ACA ATA ATT TTT AAT CGA 1011 Arg Glu Gln Phe Gly Asn Lys Thr Ile Ile Phe Asn Arg 325                 330                 335 TCC TCA GGA GGG GAC CCA GAA ATT GTA ATG CAC AGT TTT 1050 Ser Ser Gly Gly Asp Pro Glu Ile Val Met His Ser Phe         340                 345                 350 AAC TGT GGA GGG GAG TTT TTC TAC TGT AAT ACA ACA CAA 1089 Asn Cys Gly Gly Glu Phe Phe Tyr Cys Asn Thr Thr Gln                 355                 360 CTG TTT AAT AGT ACT TGG AAT AAT ACT GAA GGG ACA AAT 1128 Leu Phe Asn Ser Thr Trp Asn Asn Thr Glu Gly Thr Asn     365                 370                 375 AGC ACT GAA GGA AAT AGC ACA ATC ACA CTC CCA TGC AGA 1167 Ser Thr Glu Gly Asn Ser Thr Ile Thr Leu Pro Cys Arg             380                 385 ATA AAA CAA ATT ATA AAT ATG TGG CAG GAA GTA GGA AAA 1206 Ile Lys Gln Ile Ile Asn Met Trp Gln Glu Val Gly Lys 390                 395                 400 GCA ACG TAT GCC CCT CCC ATC AGA GGA CGA ATT AGA TGC 1245 Ala Thr Tyr Ala Pro Pro Ile Arg Gly Arg Ile Arg Cys         405                 410                 415 ATA TCA AAT ATT ACA GGA CTG CTA TTA ACA AGA GAT GGT 1284 Ile Ser Asn Ile Thr Gly Leu Leu Leu Thr Arg Asp Gly                 420                 425 GGT AGG AAT GTC ACA AAC AAT ACC GAN NCC TTC AGA CCT 1323 Gly Arg Asn Val Thr Asn Asn Thr Xaa Xaa Phe Arg Pro     430                 435                 440 GGA GGA GGA GAC ATG AGG GAC AAT TGG AGA AGT GAA TTA 1362 Gly Gly Gly Asp Met Arg Asp Asn Trp Arg Ser Glu Leu             445                 450 TAT AAA TAT AAA GTA GTA AAA GTT GAA CCA TTA GGA ATA 1401 Tyr Lys Tyr Lys Val Val Lys Val Glu Pro Leu Gly Ile 455                 460                 465 GCA CCC ACC AAG GCA AAG AGA AGA GTG GTG CAC AGA GAC 1440 Ala Pro Thr Lys Ala Lys Arg Arg Val Val His Arg Asp         470                 475                 480 AAA AGA GCA GCA CTA GGA GCT TTG TTC CTT GGG TTC TTA 1479 Lys Arg Ala Ala Leu Gly Ala Leu Phe Leu Gly Phe Leu                 485                 490 GGA GCA TAA AAG CTT CTA GA 1499 Gly Ala Xaa Lys Leu Leu      495             499 CLONE C10.5 G   GTA CCT GTG TGG AAA GAA GCA AAC ACA ACT CTA TTT 37     Val Pro Val Trp Lys Glu Ala Asn Thr Thr Leu Phe       1                 5                 10 TGT GCA TCA GAT GCT AAA GCA TAT GAT AGA GAA GTA CAT 76 Cys Ala Ser Asp Ala Lys Ala Tyr Asp Arg Glu Val His           15                  20                  25 AAT GTT TGG GCA ACA CAT GCC TGT GTA CCC ACA GAC CCC 115 Asn Val Trp Ala Thr His Ala Cys Val Pro Thr Asp Pro                  30                  35 AAC CCA CAA GAA ATA GTA TTG GGA AAT GTG ACA GAA AAT 154 Asn Pro Gln Glu Ile Val Leu Gly Asn Val Thr Glu Asn      40                  45                  50 TTT AAC ATG TGG AAA AAT AAC ATG GTA GAA CAA ATG CAT 193 Phe Asn Met Trp Lys Asn Asn Met Val Glu Gln Met His              55                  60 GAG GAT ATA ATC AAT TTA TGG GAT CAA AGC TTA AAG CCA 232 Glu Asp Ile Ile Asn Leu Trp Asp Gln Ser Leu Lys Pro  65                  70                 75 TGT GTA AAG TTA ACT CCA CTC TGT GTT ACT TTA AAG TGC 271 Cys Val Lys Leu Thr Pro Leu Cys Val Thr Leu Lys Cys          80                  85                  90 AAG GAT CTG GAG AGG AAT ACT ACC TAT AAT AGC ACT ATT 310 Lys Asp Leu Glu Arg Aen Thr Thr Tyr Asn Ser Thr Ile                  95                 100 ACC AAT AAT AGT AGT TTG GAG GGA CTA AGA GAA CAA ATG 349 Thr Asn Aen Ser Ser Leu Glu Gly Leu Arg Glu Gln Met     105                 110                 115 ACA AAC TGC TCT TTC AAC ATC ACC ACA AGT ATA AGA GAT 388 Thr Asn Cys Ser Phe Asn Ile Thr Thr Ser Ile Arg Asp             120                 125 AAG GTG CAG AAA GAA TAT GCA CTT TTG TAT AAA CTT GAT 427 Lys Val Gln Lys Glu Tyr Ala Leu Leu Tyr Lys Leu Asp 130                 135                 140 GTA GTA CCA ATA GAA GAA GAT GAC AAT ACT AGC TAT AGA 466 Val Val Pro Ile Glu Glu Asp Asp Asn Thr Ser Tyr Arg         145                 150                 155 TTG ATA AGT TGT AAC ACC TCA GTC ATT ACA CAG GCT TGT 505 Leu Ile Ser Cys Asn Thr Ser Val Ile Thr Gln Ala Cys                 160                 165 CCA AAG ACA TCC TTT GAG CCA ATT CCC ATA CAT TAT TGT 544 Pro Lys Thr Ser Phe Glu Pro Ile Pro Ile His Tyr Cys     170                 175                 180 GCC CCG GCT GGT TTT GCG ATT CTA AAG TGT AAT GAT AAG 583 Ala Pro Ala Gly Phe Ala Ile Leu Lys Cys Asn Asp Lys             185                 190 AAG TTC AAT GGA ACA GGA CCA TGT AAA AAT GTC AGC ACA 622 Lys Phe Asn Gly Thr Gly Pro Cys Lys Asn Val Ser Thr 195                 200                 205 GTA CAA TGT ACA CAT GGA ATT AGG CCA GTA GTA TCA ACT 661 Val Gln Cys Thr His Gly Ile Arg Pro Val Val Ser Thr         210                 215                 220 CAA CTG TTG TTA AAT GGC AGT CTA GCA GAA GAA GAG GTA 700 Gln Leu Leu Leu Asn Gly Ser Leu Ala Glu Glu Glu Val                 225                230 GTA ATC AGA TCT GCC AAT TTC ACA GAC AAT GCT AAA ACC 739 Val Ile Arg Ser Ala Asn Phe Thr Asp Asn Ala Lys Thr     235                 240                 245 ATA ATA GTA CAT CTA AAT GAA ACT GTA AAA ATT AAT TGT 778 Ile Ile Val His Leu Asn Glu Thr Val Lys Ile Asn Cys             250                 255 ACA AGA CTT GGC AAC AAT ACA AGA AAA AGT ATA AAT ATA 817 Thr Arg Leu Gly Asn Asn Thr Arg Lys Ser Ile Asn Ile 260                 265                 270 GGA CCA GGG AGA GTA CTC TAT GCA ACA GGA GAA ATA ATA 856 Gly Pro Gly Arg Val Leu Tyr Ala Thr Gly Glu Ile Ile         275                 280                 285 GGA GAC ATA AGA CAA GCA CAT TGT AAC ATT AGT AGA GCA 895 Gly Asp Ile Arg Gln Ala His Cys Asn Ile Ser Arg Ala                 290                 295 CAA TGG AAT AAG ACT TTA GAA AAG GTA GTT GAC AAA TTA 934 Gln Trp Asn Lys Thr Leu Glu Lys Val Val Asp Lys Leu     300                 305                 310 AGA AAA CAA TTT GGG GAT AAT ACA ACA ATA GCT TTT AAT 973 Arg Lys Gln Phe Gly Asp Asn Thr Thr Ile Ala Phe Asn             315                 320 CGA TCC TCA GGA GGG GAC CCA GAA ATT GTA ATG CAC ACT 1012 Arg Ser Ser Gly Gly Asp Pro Glu Ile Val Met His Thr 325                 330                 335 TTT AAT TGT GGA GGG GAA TTT TTC TAC TGT AAT ACA ACA 1051 Phe Asn Cys Gly Gly Glu Phe Phe Tyr Cys Asn Thr Thr         340                 345                 350 CAA CTG TTT AAT AGT ACT TGG AAT AAT ACT TGG AAG GAT 1090 Gln Leu Phe Asn Ser Thr Trp Asn Asn Thr Trp Lys Asp                 355                 360 CCT AAC AGG AGT GAC AAT ATC ACA CTC CCA TGC AGA ATA 1129 Pro Asn Arg Ser Asp Asn Ile Thr Leu Pro Cys Arg Ile     365                 370                 375 AAA CAA ATT ATA AAC ATG TGG CAG GAA GTA GGA AAA GCA 1168 Lys Gln Ile Ile Asn Met Trp Gln Glu Val Gly Lys Ala             380                 385 ATG TAC GCC CCT CCC ATC AGA GGG GAA ATT AGA TGT TCA 1207 Met Tyr Ala Pro Pro Ile Arg Gly Glu Ile Arg Cys Ser 390                 395                 400 TCA AAT ATC ACA GGG CTG CTA CTA ACA AGA GAT GGT GGT 1246 Ser Asn Ile Thr Gly Leu Leu Leu Thr Arg Asp Gly Gly         405                 410                 415 AAT GAC GAT GGT AAT GAC ACG ACC ACA AAC AGG ACC GAG 1285 Asn Asp Asp Gly Asn Asp Thr Thr Thr Asn Arg Thr Glu                 420                 425 ATC TTC AGA CCT GGA GGA GGA GAT ATG AGG GAC AAT TGG 1324 Ile Phe Arg Pro Gly Gly Gly Asp Met Arg Asp Asn Trp     430                 435                 440 AGA AGT GAA TTA TAT AGA TAT AAA GTA GTA AAA ATT GAA 1363 Arg Ser Glu Leu Tyr Arg Tyr Lys Val Val Lys Ile Glu             445                 450 CCA TTA GGA ATA GCA CCC ACC AGG GCA AAG AGA AGA GTG 1402 Pro Leu Gly Ile Ala Pro Thr Arg Ala Lys Arg Arg Val 455                 460                 465 GTG CAG AGA GAA AAA AGA GCA GTA GGA CTA GGA GCT TTG 1441 Val Gln Arg Glu Lys Arg Ala Val Gly Leu Gly Ala Leu         470                 475                 480 TTC CTT GGG T TCTTAGGAG CATAAAGCTT CTAGA 1475 Phe Leu Gly         483 CLONE C10.7 G   GTA CCT GTG TGG AAA GAA GCA AAC ACA ACT CTA TTT 37     Val Pro Val Trp Lys Glu Ala Asn Thr Thr Leu Phe       1               5                  10 TGT GCA TCA GAT GCT AAA GCA TAT GAT AGA GAA GTA CAT 76 Cys Ala Ser Asp Ala Lys Ala Tyr Asp Arg Glu Val His          15                  20                  25 AAT GTT TGG GCA ACA CAT GCC TGT GTA CCC ACA GAC CCC 115 Asn Val Trp Ala Thr His Ala Cys Val Pro Thr Asp Pro                  30                  35 AAC CCA CAA GAA ATA GTA TTG GGA AAT GTG ACA GAA AAT 154 Asn Pro Gln Glu Ile Val Leu Gly Asn Val Thr Glu Asn      40                  45                  50 TTT AAC ATG TGG AAA AAT AAC ATG GTA GAA CAA ATG CAT 193 Phe Asn Met Trp Lys Asn Asn Met Val Glu Gln Met His              55                  60 GAG GAT ATA ATC AAT TTA TGG GAT CAA AGC TTA AAG CCA 232 Glu Asp Ile Ile Asn Leu Trp Asp Gln Ser Leu Lys Pro  65                  70                  75 TGT GTA AAG TTA ACT CCA CTC TGT GTT ACT TTA AAG TGC 271 Cys Val Lys lAu Thr Pro Leu Cys Val Thr Leu Lys Cys          80                  85                  90 AAG GAT CTG GAG AGG AAT ACT ACC TAT AAT AGC ACT ATT 310 Lys Asp Leu Glu Arg Asn Thr Thr Tyr Asn Ser Thr Ile                  95                 100 ACC AAT AAT AGT AGT TTG GAG GGA CTA AGA GAA CAA ATG 349 Thr Asn Asn Ser Ser Leu Glu Gly Leu Arg Glu Gln Met     105                 110                 115 ACA AAC TGC TCT TTC AAC ATC ACC ACA AGT ATA AGA GAT 388 Thr Asn Cys Ser Phe Asn Ile Thr Thr Ser Ile Arg Asp             120                 125 AAG GTG CAG AAA GAA TAT GCA CTT TTG TAT AAA CTT GAT 427 Lys Val Gln Lys Glu Tyr Ala Leu Leu Tyr Lys Leu Asp 130                 135                 140 GTA GTA CCA ATA GAA GAA GAT GAC AAT ACT AGC TAT AGA 466 Val Val Pro Ile Glu 0Th Asp Asp Asn Thr Ser Tyr Arg         145                 150                 155 TTG ATA AGT TGT AAC ACC TCA GTC ATT ACA CAG GCT TGT 505 Leu Ile Ser Cys Asn Thr Ser Val Ile Thr Gln Ala Cys                 160                 165 CCA AAG ACA TCC TTT GAG CCA ATT CCC ATA CAT TAT TGT 544 Pro Lys Thr Ser Phe Glu Pro Ile Pro Ile His Tyr Cys     170                 175                 180 GCC CCG GCT GGT TTT GCG ATT CTA AAG TGT AAT GAT AAG 583 Ala Pro Ala Gly Phe Ala Ile Leu Lys Cys Asn Asp Lys             185                 190 AAG TTC AAT GGA ACA GGA CCA TGT AAA AAT GTC AGC ACA 622 Lys Phe Asn Gly Thr Gly Pro Cys Lys Asn Val Ser Thr 195                 200                 205 GTA CAA TGT ACA CAT GGA ATT AGG CCA GTA GTA TCA ACT 661 Val Gln Cys Thr His Gly Ile Arg Pro Val Val Ser Thr         210                 215                 220 CAA CTG TTG TTA AAT GGC AGT CTA GCA GAA GAA GAG GTA 700 Gln Leu Leu Leu Asn Gly Ser Leu Ala Glu Glu Glu Val                 225                 230 GTA ATC AGA TCT GCC AAT TTC ACA GAC AAT GCT AAA ACC 739 Val Ile Arg Ser Ala Asn Phe Thr Asp Asn Ala Lys Thr     235                 240                 245 ATA ATA GTA CAT CTA AAT GAA ACT GTA AAA ATT AAT TGT 778 Ile Ile Val His Leu Asn Glu Thr Val Lys Ile Asn Cys             250                 255 ACA AGA CTT GGC AAC AAT ACA AGA AAA AGT ATA AAT ATA 817 Thr Arg Leu Gly Asn Asn Thr Arg Lys Ser Ile Asn Ile 260                 265                 270 GGA CCA GGG AGA GTA CTC TAT GCA ACA GGA GAA ATA ATA 856 Gly Pro Gly Arg Val Leu Tyr Ala Thr Gly Glu Ile Ile         275                 280                 285 GGA GAC ATA AGA CAA GCA CAT TGT AAC ATT AGT AGA GCA 895 Gly Asp Ile Arg Gln Ala His Cys Asn Ile Ser Arg Ala                 290                 295 CAA TGG AAT AAG ACT TTA GAA AAG GTA GTT GAC AAG TTA 934 Gln Trp Asn Lys Thr Leu Glu Lys Val Val Asp Lys Leu     300                 305                 310 AGA AAA CAA TTT GGG GAT AAT ACA ACA ATA GCT TTT AAT 973 Arg Lys Gln Phe Gly Asp Asn Thr Thr Ile Ala Phe Asn             315                 320 CGA TCC TCA GGA GGG GAC CCA GAA ATT GTA ATG CAC ACT 1012 Arg Ser Ser Gly Gly Asp Pro Glu Ile Val Met His Thr 325                 330                 335 TTT AAT TGT GGA GGG GAA TTT TTC TAC TGT AAT ACA ACA 1051 Phe Asn Cys Gly Gly Glu Phe Phe Tyr Cys Asn Thr Thr         340                 345                 350 CAA CTG TTT AAT AGT ACT TGG AAT AAT ACT TGG AAG GAT 1090 Gln Leu Phe Asn Ser Thr Trp Asn Asn Thr Trp Lys Asp                 355                 360 CCT AAC AGG AGT GAC AAT ATC ACA CTC CCA TGC AGA ATA 1129 Pro Asn Arg Ser Asp Asn Ile Thr Leu Pro Cys Arg Ile     365                 370                 375 AAA CAA ATT ATA AAC ATG TGG CAG GAA GTA GGA AAA GCA 1168 Lys Gln Ile Ile Asn Met Trp Gln Glu Val Gly Lys Ala             380                 385 ATG TAC GCC CCT CCC ATC AGA GGG GAA ATT AGA TGT TCA 1207 Met Tyr Ala Pro Pro Ile Arg Gly Glu Ile Arg Cys Ser 390                 395                 400 TCA AAT ATC ACA GGG CTG CTA CTA ACA AGA GAT GGT GGT 1246 Ser Asn Ile Thr Gly Leu Leu Leu Thr Arg Asp Gly Gly         405                 410                 415 AAT GAC GAT GGT AAT GAC ACG ACC ACA AAC AGG ACC GAG 1285 Asn Asp Asp Gly Asn Asp Thr Thr Thr Asn Arg Thr Glu                 420                 425 ATC TTC AGA CCT GGA GGA GGA GAT ATG AGG GAC AAT TGG 1324 Ile Phe Arg Pro Gly Gly Gly Asp Met Arg Asp Asn Trp     430                 435                 440 AGA AGT GAA TTA TAT AGA TAT AAA GTA GTA AAA ATT GAA 1363 Arg Ser Glu Leu Tyr Arg Tyr Lys Val Val Lys Ile Glu             445                 450 CCA TTA GGA ATA GCA CCC ACC AGG GCA AAG AGA AGA GTG 1402 Pro Leu Gly Ile Ala Pro Thr Arg Ala Lys Arg Arg Val 455                 460                 465 GTG CAG AGA GAA AAA AGA GCA GTA GGA CTA GGA GCT TTG 1441 Val Gln Arg Glu Lys Arg Ala Val Gly Leu Gly Ala Leu         470                 475                 480 TTC CTT GGG TTC TTG GGA GCA TAA AGC TTC TAG A 1475 Phe Leu Gly Phe Leu Gly Ala Xaa Ser Phe Xaa                 485                 490 491 CLONE C17.1     CTC GAG GTA CCT GTG TGG AAA GAA GCA ACC ACC ACT 36     Leu Glu Val Pro Val Trp Lys Glu Ala Thr Thr Thr       1              5                  10 CTA TTT TGT GCA TCA GAT GCT AAA GCA TAT GAT TCA GAG 75 Leu Phe Cys Ala Ser Asp Ala Lys Ala Tyr Asp Ser Glu          15                  20                  25 GCA CAT AAT GTT TGG GCC ACA CAT GCC TGT GTA CCC ACA 114 Ala His Asn Val Trp Ala Thr His Ala Cys Val Pro Thr                  30                  35 GAC CCC AAC CCA CAA GAA GTA GAA TTG GAA AAT GTG ACA 153 Asp Pro Asn Pro Gln Glu Val Glu Leu Glu Asn Val Thr      40                  45                  50 GAA AAT TTT AAC ATG TGG AAA AAT AAC ATG GTA GAA CAG 192 Glu Asn Phe Asn Met Trp Lys Asn Asn Met Val Glu Gln              55                  60 ATG CAT GGO GAT ATA ATT AGT TTA TGG GAT CAA AGC CTA 231 Met His Gly Asp Ile Ile Ser Leu Trp Asp Gln Ser Leu  65                  70                  75 AAG CCA TGT GTA AAA TTA ACC CCA CTC TGT GTT ACG TTA 270 Lys Pro Cys Val Lys Leu Thr Pro Leu Cys Val Thr Leu          80                  85                  90 AAT TGC ACT GAC CCA AAT GTT ACT AAT AGC GAG AGA ACG 309 Asn Cys Thr Asp Pro Asn Val Thr Asn Ser Glu Arg Thr                  95                 100 ATA GAG GGG GGA GAA ATA AAA AAT TGC TCT TTC AAT ATC 348 Ile Glu Gly Gly Glu Ile Lys Asn Cys Ser Phe Asn Ile     105                 110                 115 ACC ACA AAC ATA AGA GAT AGG TTT CAG AAA GAA TAT GCA 387 Thr Thr Asn Ile Arg Asp Arg Phe Gln Lys Glu Tyr Ala             120                 125 CTT TTT TAT AAA CTT GAT GTA ATA CCA TTA GGT AAT GAT 426 Leu Phe Tyr Lys Leu Asp Val Ile Pro Leu Gly Asn Asp 130                 135                 140 AAT ACT AGC TAT AGG TTG ATA AGT TGT AAC ACC TCA GTC 465 Asn Thr Ser Tyr Arg Leu Ile Ser Cys Asn Thr Ser Val         145                 150                 155 ATT ACA CAG GCC TGT CCA AAG GTA TCC TTT GAG CCA ATT 504 Ile Thr Gln Ala Cys Pro Lys Val Ser Phe Glu Pro Ile                 160                 165 CCC ATA CAT TAT TGT GCC CCG GCT GGT TTT GCG ATT CTA 543 Pro Ile His Tyr Cys Ala Pro Ala Gly Phe Ala Ile Leu     170                 175                 180 AAG TGT AAA GAT AAG AAG TTC AAT GGA ACA GGA CCA TGT 582 Lys Cys Lys Asp Lys Lys Phe Asn Gly Thr Gly Pro Cys             185                 190 ACA AAT GTC AGC ACA GTA CAA TGT ACA CAT GGA ATT AAG 621 Thr Asn Val Ser Thr Val Gln Cys Thr His Gly Ile Lys 195                 200                 205 CCA GTA GTA TCA ACT CAA CTG TTG TTA AAT GGC AGT CTA 660 Pro Val Val Ser Thr Gln Leu Leu Leu Asn Gly Ser Leu         210                 215                 220 GCA GAA GAA GAC ATA GTA ATT AGA TCC GCC AAT CTC ACA 699 Ala Glu Glu Asp Ile Val Ile Arg Ser Ala Asn Leu Thr                 225                 230 GAC AAT GCT AAA AAC ATA ATA GTA CAG CTG AAT GAA TCT 738 Asp Asn Ala Lys Asn Ile Ile Val Gln Leu Asn Glu Ser     235                 240                 245 GTA ACA ATG AAT TGT ACA AGA CCC AAC AAC AAT ACA ATG 777 Val Thr Met Asn Cys Thr Arg Pro Asn Asn Asn Thr Met             250                 255 AAA AGT ATA CAT ATA GGA CCA GGC AGA GCA TTT TAT GCA 816 Lys Ser Ile His Ile Gly Pro Gly Arg Ala Phe Tyr Ala 260                 265                 270 ACA GGA AAC ATA ATA GGA GAT ATA AGA CAA GCA CAT TGT 855 Thr Gly Asn Ile Ile Gly Asp Ile Arg Gln Ala His Cys         275                 280                 285 AAC ATT AGT GGA ACA AAA TGG AAT GAC ACT TTG AAA AAG 894 Asn Ile Ser Gly Thr Lys Trp Asn Asp Thr Leu Lys Lys                 290                 295 ATA GCT ATA AAA TTA AGA GAA CAA TTT AAT AAG ACA ATA 933 Ile Ala Ile Lys Leu Arg Glu Gln Phe Asn Lys Thr Ile     300                 305                 310 GTC TTT AAT CAA TCC TCA GGA GGG GAC CCA GAA ATT GCA 972 Val Phe Asn Gln Ser Ser Gly Gly Asp Pro Glu Ile Ala             315                 320 ACG CTC AGT TTT AAT TGT GGA GGG GAA TTT TTC TAC TGT 1011 Thr Leu Ser Phe Asn Cys Gly Gly Glu Phe Phe Tyr Cys 325                 330                 335 AAT TCA ACA CAA CTG TTT AAT AGT ACT TGG AAT AGT ACT 1050 Asn Ser Thr Gln Leu Phe Asn Ser Thr Trp Asn Ser Thr         340                 345                 350 GGG TCA AAT AAC ACT AAA GGA AAT GAC ACA ATC ACA CTC 1089 Gly Ser Asn Asn Thr Lys Gly Asn Asp Thr Ile Thr Leu                 355                 360 CCA TGC AGA ATA AGA CAA ATT ATA AAC ATG TGG CAG AAA 1128 Pro Cys Arg Ile Arg Gln Ile Ile Asn Met Trp Gln Lys     365                 370                 375 ATA GGA AAA GCA ATG TAT GCC CCT CCC ATC AAA GGG CAA 1167 Ile Gly Lys Ala Met Tyr Ala Pro Pro Ile Lys Gly Gln             380                 385 ATT AGA TGT TCA TCA AAT ATT ACA GGG CTA ATA TTA ACA 1206 Ile Arg Cys Ser Ser Asn Ile Thr Gly Leu Ile Leu Thr 390                 395                 400 AGA GAT GGT GGT AAC AAC AAC ATG AGC AAG ACC ACC GAG 1245 Arg Asp Gly Gly Asn Asn Asn Met Ser Lys Thr Thr Glu         405                 410                 415 ACC TTC AGA CCT GGA GGA GGA GAT ATG AOG GAC AAT TGG 1284 Thr Phe Arg Pro Gly Gly Gly Asp Met Arg Asp Asn Trp                 420                 425 AGA AGT GAA TTA TAT AAA TAT AAA GTA GTA AAA ATT GAA 1323 Arg Ser Glu Leu Tyr Lys Tyr Lys Val Val Lys Ile Glu     430                 435                 440 CCA TTA GGA GTA GCA CCC ACC AGG GCA AAG AGA AGA GTG 1362 Pro Leu Gly Val Ala Pro Thr Arg Ala Lys Arg Arg Val             445                 450 GTG CAG AGA GAA AAA AGA GCA GTG GGA ATA GGA GCT GTG 1401 Val Gln Arg Glu Lys Arg Ala Val Gly Ile Gly Ala Val 455                 460                 465 TTC CTT GGG TTC TTG GGA GCA TAA AGC TTC TAG A 1435 Phe Leu Gly Phe Leu Gly Ala Xaa Ser Phe Xaa         470                 475         478 CLONE C17.3     CTC GAG GTA CCT GTG TGG AAA GAA GCA ACC ACC ACT 36     Leu Glu Val Pro Val Trp Lys Glu Ala Thr Thr Thr       1               5                  10 CTA TTT TGT GCA TCA GAT GCT AAA GCA TAT GAT TCA GAG 75 Leu Phe Cys Ala Ser Asp Ala Lys Ala Tyr Asp Ser Glu           15                 20                  25 GCA CAT AAT GTT TGG GCC ACA CAT GCC TGT GTA CCC ACA 114 Ala His Asn Val Trp Ala Thr His Ala Cys Val Pro Thr                  30                  35 GAC CCC AAC CCA CAA GAA GTA GAA TTG GAA AAT GTG ACA 153 Asp Pro Asn Pro Gln Glu Val Glu Leu Glu Asn Val Thr      40                  45                  50 GAA AAT TTT AAC ATG TGG AAA AAT AAC ATG GTA GAA CAG 192 Glu Asn Phe Asn Met Trp Lys Asn Asn Met Val Glu Gln              55                  60 ATG CAT GGG GAT ATA ATT AGT TTA TGG GAT CAA AGC CTA 231 Met His Gly Asp Ile Ile Ser Leu Trp Asp Gln Ser Leu  65                  70                  75 AAG CCA TGT GTA AAA TTA ACC CCA CTC TGT GTT ACG TTA 270 Lys Pro Cys Val Lys Leu Thr Pro Leu Cys Val Thr Leu          80                  85                  90 AAT TGC ACT GAC CCA AAT GTT ACT AAT AGC GAG AGA ACG 309 Asn Cys Thr Asp Pro Asn Val Thr Asn Ser Glu Arg Thr                  95                 100 ATA GAG GGG GGA GAA ATA AAA AAT TGC TCT TTC AAT ATC 348 Ile Glu Gly Gly Glu Ile Lys Asn Cys Ser Phe Asn Ile     105                 110                 115 ACC ACA AAC ATA AGA GAT AGG TTT CAG AAA GAA TAT GCA 387 Thr Thr Asn Ile Arg Asp Arg Phe Gln Lys Glu Tyr Ala             120                 125 CTT TTT TAT AAA CTT GAT GTA ATA CCA TTA GGT AAT GAT 426 Leu Phe Tyr Lys Leu Asp Val Ile Pro Leu Gly Asn Asp 130                 135                 140 AAT ACT AGC TAT AGG TTG ATA AGT TGT AAC ACC TCA GTC 465 Asn Thr Ser Tyr Arg Leu Ile Ser Cys Asn Thr Ser Val         145                 150                 155 ATT ACA CAG GCC TGT CCA AAG GTA TCC TTT GAG CCA ATT 504 Ile Thr Gln Ala Cys Pro Lys Val Ser Phe Glu Pro Ile                 160                 165 CCC ATA CAT TAT TGT GCC CCG GCT GGT TTT GCG ATT CTA 543 Pro Ile His Tyr Cys Ala Pro Ala Gly Phe Ala Ile Leu     170                 175                 180 AAG TGT AAA GAT AAG AAG TTC AAT GGA ACA GGA CCA TGT 582 Lys Cys Lys Asp Lys Lys Phe Asn Gly Thr Gly Pro Cys             185                 190 ACA AAT GTC AGC ACA GTA CAA TGT ACA CAT GGA ATT AAG 621 Thr Asn Val Ser Thr Val Gln Cys Thr His Gly Ile Lys 195                 200                 205 CCA GTA GTA TCA ACT CAA CTG TTG TTA AAT GGC AGT CTA 660 Pro Val Val Ser Thr Gln Leu Leu Leu Asn Gly Ser Leu         210                 215                 220 GCA GAA GAA GAC ATA GTA ATT AGA TCC GCC AAT CTC ACA 699 Ala Glu Glu Asp Ile Val Ile Arg Ser Ala Asn Leu Thr                 225                 230 GAC AAT GCT AAA AAC ATA ATA GTA CAG CTG AAT GAA TCT 738 Asp Asn Ala Lys Asn Ile Ile Val Gln Leu Asn Glu Ser     235                 240                 245 GTA ACA ATG AAT TGT ACA AGA CCC AAC AAC AAT ACA ATG 777 Val Thr Met Asn Cys Thr Arg Pro Asn Asn Asn Thr Met             250                 255 AAA AGT ATA CAT ATA GGA CCA GGC AGA GCA TTT TAT GCA 816 Lys Ser Ile His Ile Gly Pro Gly Arg Ala Phe Tyr Ala 260                 265                 270 ACA GGA AAC ATA ATA GGA GAT ATA AGA CAA GCA CAT TGT 855 Thr Gly Asn Ile Ile Gly Asp Ile Arg Gln Ala His Cys         275                 280                 285 AAC ATT AGT GGA ACA AAA TGG AAT GAC ACT TTG AAA AAG 894 Asn Ile Ser Gly Thr Lys Trp Aen Asp Thr Leu Lys Lys                 290                 295 ATA GCT ATA AAA TTA AGA GAA CAA TTT AAT AAG ACA ATA 933 Ile Ala Ile Lys Leu Arg Glu Gln Phe Asn Lys Thr Ile     300                 305                 310 GTC TTT AAT CAA TCC TCA GGA GGG GAC CCA GAA ATT GCA 972 Val Phe Asn Gln Ser Ser Gly Gly Asp Pro Glu Ile Ala             315                 320 ACG CTC AGT TTT AAT TGT GGA GGG GAA TTT TTC TAC TGT 1011 Thr Leu Ser Phe Asn Cys Gly Gly Glu Phe Phe Tyr Cys 325                 330                 335 AAT TCA ACA CAA CTG TTT AAT AGT ACT TGG AAT AGT ACT 1050 Asn Ser Thr Gln Leu Phe Asn Ser Thr Trp Asn Ser Thr         340                 345                 350 GGG TCA AAT AAC ACT AAA GGA AAT GAC ACA ATC ACA CTC 1089 Gly Ser Asn Asn Thr Lys Gly Asn Asp Thr Ile Thr Leu                 355                 360 CCA TGC AGA ATA AGA CAA ATT ATA AAC ATG TGG CAG AAA 1128 Pro Cys Arg Ile Arg Gln Ile Ile Asn Met Trp Gln Lys     365                 370                 375 ATA GGA AAA GCA ATG TAT GCC CCT CCC ATC AAA GGG CAA 1167 Ile Gly Lys Ala Met Tyr Ala Pro Pro Ile Lys Gly Gln             380                 385 ATT AGA TGT TCA TCA AAT ATT ACA GGG CTA ATA TTA ACA 1206 Ile Arg Cys Ser Ser Asn Ile Thr Gly Leu Ile Leu Thr 390                 395                 400 AGA GAT GGT GGT AAC AAC AAC ATG AGC AAG ACC ACC GAG 1245 Arg Asp Gly Gly Asn Asn Asn Met Ser Lys Thr Thr Glu         405                 410                 415 ACC TTC AGA CCT GGA GGA GGA GAT ATG AGG GAC AAT TGG 1284 Thr Phe Arg Pro Gly Gly Gly Asp Met Arg Asp Asn Trp                 420                 425 AGA AGT GAA TTA TAT AAA TAT AAA GTA GTA AAA ATT GAA 1323 Arg Ser Glu Leu Tyr Lys Tyr Lys Val Val Lys Ile Glu     430                 435                 440 CCA TTA GGA GTA GCA CCC ACC AGG GCA AAG AGA AGA GTG 1362 Pro Leu Gly Val Ala Pro Thr Arg Ala Lys Arg Arg Val             445                 450 GTG CAG AGA GAA AAA AGA GCA GTG GGA ATA GGA GCT GTG 1401 Val Gln Arg Glu Lys Arg Ala Val Gly Ile Gly Ala Val 455                 460                 465 TTC CTT GGG TTC TTG GGA GCA TAA AGC TTC TAG A 1435 Phe Leu Gly Phe Leu Gly Ala Xaa Ser Phe Xaa         470                 475         478

[0041] In addition to the listing in Table 1, FIG. 3 shows the alignment of the amino acid sequences of the clones of each of the seven isolates. Corresponding residues from various clones are in boxes. In the figure, the amino acid sequences are aligned against MN-rgp120 (SEQ. ID. NO. 29).

[0042] In one embodiment, a gp120 polypeptide of this invention has the same amino acid sequence as the sequence of one of the breakthrough isolates. In another embodiment, the amino acid sequence is truncated, as described in detail hereinafter. In another embodiment, a gp120 polypeptide sequence of this invention contains a substitution, insertion, or deletion (alteration) of one or more amino acids in the sequence of a breakthrough isolate. Usually, with the exception of amino acids that are not present in a truncated amino acid sequence and eliminate an epitope, a gp120 polypeptide of this invention will include alterations in the amino acid sequence of a breakthrough isolate that do not alter the polypeptide's ability to induce the same neutralizing antibodies as the amino acid sequence of the isolate.

[0043] In general, substitutions in the amino acid sequence of a gp120 polypeptide of this invention are conservative substitutions, particularly for amino acid residues in the V2, V3, and C4 domains of gp120, which domains contain neutralizing epitopes. However, non-conservative substitutions, particularly in domains that do not contain neutralizing epitopes are contemplated.

[0044] Conservative substitutions replace an amino acid with an amino acid of similar size and character. For example, a hydrophobic residue or hydrophilic residue is replaced with another hydrophobic residue or hydrophilic residue, respectively. Amino acids can be divided into the following groups: positively charged residues (K, R and H); negatively charged residues (D and E); amides (N and Q); aromatics (F, Y, and W); hydrophobics (P, G, A, V, L, I, and M); and uncharged residues (S and T). Usually, residues within a group are replaced with another member of the group.

[0045] In one embodiment, critical amino acid residues in the V2, V3, and C4 domains of gp120 are identical to the corresponding residues in a breakthrough-isolate sequence. Critical amino acid residues in the V2, V3, and C4 domains of gp120 are described in the experimental section. In another embodiment, all amino acid residues in the V2, V3, and C4 domains of gp120 are identical to corresponding residues in a breakthrough isolate sequence.

[0046] Oligonucleotide Encoding gp120 from Breakthrough Isolates

[0047] The present invention also provides novel oligonucleotides encoding gp120 from the breakthrough isolates which can be used to express gp120. An oligonucleotide of this invention encodes a polypeptide of this invention. The oligonucleotide can be DNA or RNA, usually DNA. Although numerous nucleotide sequences can encode the same amino acid sequence due to the degeneracy of the genetic code, conveniently, the oligonucleotides of this invention include a nucleotide sequence of a breakthrough isolate as illustrated in Table 1 (Sequence ID Nos. 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22, 24, 26, and 28). Usually, an oligonucleotide of this invention is less than about 5 kilobases (kb), preferably less than about 3 kb.

[0048] To express the encoded amino acid sequence, the oligonucleotide can be inserted into a transcription unit. The transcription unit can be inserted into a plasmid for production of cell lines, inserted into a virus (e.g.; vaccinia) or can be used directly as a DNA vaccine. Suitable transcription units for production of vaccine proteins are well known. A preferred expression vector, designated psvI6B5, is illustrated in Sequence ID No. 32. The vector includes an HSV-1 gD1 signal sequence joined to a linker sequence. The gp120 nucleotide sequence to be expressed starts with the Kpn I site of the gene. Since all gp120 or gp160 sequences contain this site, any gp120 nucleotide sequence can be analogously inserted into the vector and expressed. The vector ends with a polyA tail from SV40.

[0049] In addition to being useful to express a polypeptide sequence of this invention, the oligonucleotides of this invention can also be used in diagnostics to detect HIV isolates. For example, the oligonucleotide or a portion thereof encoding a neutralizing epitope can be used in branched chain DNA diagnostics or as a probe in in situ hybridization studies.

[0050] Vaccine Preparation

[0051] A gp120 polypeptide of this invention from a selected breakthrough isolate(s) in a suitable carrier is used to make a subunit vaccine. The polypeptide can be used alone, but is generally administered in a multivalent subunit vaccine that includes gp120 MN. In addition to one or more gp120 polypeptides of this invention, the vaccine generally includes the MN polypeptide (hereinafter, MN-rgp120). The vaccine usually includes about 3 to about 5 different gp120 polypeptides, but 30 or more different gp120 polypeptides can be used.

[0052] Preparation of gp120 polypeptides for use in a vaccine is well known and is described hereinafter. With the exception of the use of the selected HIV isolate, the gp120 subunit vaccine prepared in the method does not differ from gp120 subunit vaccines of the prior art.

[0053] As with prior art gp120 subunit vaccines, gp120 at the desired degree of purity and at a sufficient concentration to induce antibody formation is mixed with a physiologically acceptable carrier. A physiologically acceptable carrier is nontoxic to a recipient at the dosage and concentration employed in the vaccine. Generally, the vaccine is formulated for injection, usually intramuscular or subcutaneous injection. Suitable carriers for injection include sterile water, but preferably are physiologic salt solutions, such as normal saline or buffered salt solutions such as phosphate-buffered saline or ringer's lactate. The vaccine generally contains an adjuvant. Useful adjuvants include QS21 (Quillaja saponaria, commercially available from Cambridge Biotech, Worcester, Mass.), which stimulates cytotoxic T-cells, and alum (aluminum hydroxide adjuvant). Formulations with different adjuvants which enhance cellular or local immunity can also be used. In particular, immunopotentiators such as cytokines can be included in the vaccine. Examples of suitable immunopotentiating cytokines include interleukins, such as interleukin-2 (IL-2) and interleukin-12 (IL-12), and tumor necrosis factor-alpha (TNF-α).

[0054] Additional excipients that can be present in the vaccine include low molecular weight polypeptides (less than about 10 residues), proteins, amino acids, carbohydrates including glucose or dextrans, chelating agents such as EDTA, and other excipients that stabilize the protein or inhibit growth of microorganisms.

[0055] The vaccine can also contain other HIV proteins. In particular, gp41 or the extracellular portion of gp41 or HIV-1 core proteins such as P24, P17, and P55 can be present in the vaccine. Although the amino acid sequence of gp41 is more conserved than that of gp120, gp41 contains neutralizing epitopes. Preferably, any gp41 present in the vaccine is from an HIV isolate present in the vaccine. gp160 from an isolate used in the vaccine can replace gp120 in the vaccine or be used together with gp120 from the isolate. Alternatively, gp160 from a different isolate than those in the vaccine can additionally be present in the vaccine.

[0056] Vaccines according to the invention can also contain one or more soluble gp120 polypeptide sequences, or fragments thereof, in combination with an engineered virus specifically designed to express proteins that induce a cytotoxic T-cell response. Suitable engineered viruses are derived from, for example, Canary Pox virus, vaccinia viruses, attenuated human herpes viruses (such as, e.g., herpes simplex viruses), and Varicella Zoster. Exemplary engineered viruses are modified to express any HIV protein capable of inducing a cytotoxic T-cell response, such as those described above. Typically, immunization with the gp120/engineered virus vaccine is followed by administration of one or more doses of the gp120 polypeptide sequence(s) to boost the immune response. If desired, viruses can be engineered to express one or more gp120 polypeptide sequences of the invention, or fragments thereof, and used in vaccines with or without soluble gp120 polypeptide sequences.

[0057] Vaccine formulations generally include a total of about 300 to 600 μg of gp120, conveniently in about 1.0 ml of carrier. Preferred formulations include use of twice the weight of a gp120 polypeptide in twice as 600 μg alum. However, formulations having smaller amounts (e.g.; 50 μg per dose) are also used, generally with alum or other adjuvants. The amount of gp120 for any isolate present in the vaccine will vary depending on the immunogenicity of the gp120. For example, gp120 from some strains of HIV may be less immunogenic than gp120 from the MN strain (Sequence ID No. 29). If two strains having different immunogenicity are used in combination, empirical titration of the amount of each virus would be performed to determine the percent of the gp120 of each strain in the vaccine. For isolates having similar immunogenicity, approximately equal amounts of each isolate's gp120 would be present in the vaccine. For example, in a preferred embodiment, the vaccine includes gp120 from the MN and a strain of this invention at concentrations of about 300 μg per strain in about 1.0 ml of carrier. When the vaccine includes gp120 from about 30 isolates, about 10 to about 50 μg can be used. Methods of determining the relative amount of an immunogenic protein in multivalent vaccines are well known and have been used, for example, to determine relative proportions of various isolates in multivalent polio vaccines.

[0058] The vaccines of this invention are administered in the same manner as prior art HIV gp120 subunit vaccines. In particular, the vaccines are generally administered at 0, 1, and at 6, 8 or 12 months, depending on the protocol. A preferred protocol includes administration at 0, 1, 6, and 12 months. Following the immunization procedure, annual or bi-annual boosts can be administered. However, during the immunization process and thereafter, neutralizing antibody levels can be assayed and the protocol adjusted accordingly.

[0059] The vaccine is administered to uninfected individuals. In addition, the vaccine can be administered to seropositive individuals to augment immune response to the virus, as with prior art HIV vaccines. It is also contemplated that DNA encoding the strains of gp120 for the vaccine can be administered in a suitable vehicle for expression in the host. In this way, gp120 can be produced in the infected host, eliminating the need for repeated immunizations. Preparation of gp120 expression vehicles is described hereinafter.

[0060] Although the gp120 isolates described herein can be used as a vaccine as described above, the amino acid sequences can also be used alone or in combinations in the same type of formulation for use as an immunogen, to induce antibodies that recognize the isolate(s) present in the immunogen. Immunogens are formulated in the same manner as vaccines and can include the same excipients, etc. Antibodies induced by the immunogens can be used in a diagnostic to detect the HIV strain in the immunogen or to affinity purify the strain.

[0061] gp120 Polypeptide Sequences and Chemokine Receptors

[0062] While CD4 is the primary cellular receptor for HIV-1, it is not sufficient for entry of HIV-1 into cells. Co-receptors required in conjunction with CD4 have been identified. These co-receptors are members of the chemokine receptor family of seven-transmembrane G-protein coupled receptors. The chemokine superfamily is subdivided into two groups based on the amino terminal cysteine spacing. The CXC chemokines are primarily involved in neutrophil-mediated inflammation, and the CC chemokines tend to be involved in chronic inflammation. At least five CC chemokine receptors, designated CC-CKR1-5 (also known in the art as CCR1-5), and at least four CXC chemokine receptors, designated CXC-CKR1-4 (also known as CXCR-1-4), have been identified.

[0063] CXC-CKR-4 (CXCR-4), which has also been called the alpha-chemokine receptor fusin, serves as an entry cofactor for T-cell-tropic HIV-1 strains. CC-CKR-5 (CC-RS), which has been called beta-chemokine receptor, together with its related family members, such as CC-CKR-2b and CC-CKR3, serve as entry cofactors for macrophage-tropic HIV-1 strains. T-cell-tropic strains can infect primary T-cells and T-cell lines, but not macrophages, whereas macrophage-tropic strains can infect macrophages and primary T-cells, but not T-cell lines. T-cell- and macrophage-tropic strains are discussed more fully in Deng et. al., Nature 381:661-666 (1996), which is hereby incorporated by reference in its entirety. Examples of T-cell-tropic strains include laboratory isolates, such as IIIB and MN. Macrophage-tropic strains include primary isolates, including but not limited to A244, GNE6, GNE8, and breakthrough viruses from vaccinees immunized with gp120-based vaccines. Dual-tropic strains can use both types of co-receptors, entering cells via CXC-CKR-4 or via one or more CC-CKR family members, preferably CC-CKR-5, CC-CKR-2b, or CC-CKR-3. While the present invention is not intended to be bound or limited by any one theory, the entry of T-cell tropic and macrophage-tropic HIV-1 strains is believed to provide a unifying explanation of the differences in cell tropism between viral strains, the resistance to HIV-1 infection by many CD4-transfected nonprimate cells, and the HIV-1-infection resistance of a portion of the human population.

[0064] Accordingly, in one embodiment is a vaccine containing (1) a first gp120 polypeptide sequence, or fragment thereof, from a macrophage-tropic HIV-1 strain and/or a second gp120 polypeptide sequence, or fragment thereof, from a T-cell tropic strain, in combination with (2) a breakthrough isolate HIV gp120 polypeptide sequence, or fragment thereof, from a vaccinee vaccinated with the first and/or second HIV gp120 polypeptide sequence. Preferably, the vaccine includes at least two gp120 polypeptide sequences that bind to different chemokine receptors. In one embodiment, the vaccine includes first and second gp120 polypeptide sequences that bind to different chemokine receptors. In addition, the breakthrough isolate gp120 polypeptide sequence can bind to a different chemokine receptor than the chemokine receptor(s) bound by either-or both of the first and second gp120 polypeptide sequence(s).

[0065] A preferred T-cell tropic strain is a laboratory isolate, most preferably MN. Preferred macrophage-tropic viruses for use in the invention are GNE6 and GNE8, which are representative of the breakthrough viruses disclosed herein and differ from MN in that their gp120s induce the formation of antibodies that recognize the gp120 sequences (e.g., the V3 domain) involved in binding to CC chemokine receptors, such as CXC-CKR-5.

[0066] In one embodiment, HIV infection is prevented by administering one or more chemokine receptor-binding gp120 polypeptide sequences, or fragment(s) thereof containing appropriate chemokine receptor-binding domains, in a vaccine, such as those described above. Preferably, the vaccine also includes one or more CD4-binding gp120 polypeptide sequences or appropriate fragments thereof. Such vaccines induce anti-HIV antibodies that inhibit viral gp120-chemokine receptor or -CD4 binding. In addition, such gp120 polypeptides can directly inhibit HIV infection by binding to one or more co-receptors for HIV infection, such as CD4 or a chemokine receptor, thus providing a prophylactic or therapeutic effect in treating HIV infection. Preferably, gp120 polypeptide sequences useful in this regard contain the T-cell binding (TCB) domain.

[0067] Various uses of chemokine receptor-binding gp120 polypeptides are discussed below with regard to the CC chemokine receptor family. However, those skilled in the art recognize that this discussion applies equally to CXC chemokine receptors that act as cofactors in HIV infection.

[0068] The gp120 polypeptides can be used as a composition containing one or more gp120 polypeptides, as described for use as a vaccine or immunogen. The composition can be administered, prophylactically or therapeutically, to a patient at risk of infection or in need of such treatment using the dosages and routes and means of administration described herein. However, chronic administration may be preferred and dosages can be adjusted accordingly. It is noted that in vivo administration can also induce antibodies that bind viral gp120, further inhibiting virus binding to CC-CKR.

[0069] The gp120 polypeptides can also be used in screening assays to identify antagonists of CC-CKR. For example, candidate antagonists can be screened for inhibition of binding of gp120 to a CC-CKR CC-CKR receptor that is isolated and attached to a surface (e.g., plastic dish) or recombinantly or naturally expressed on the surface of a cell. Antagonists can either bind gp120 or bind receptor. Preferred candidate antagonists include gp120 compounds, small gp120 peptides (5 to 20 amino acids in length, preferably 7 to 10 amino acids in length) or peptidomimetics of gp120 that bind receptor, monoclonal antibodies that bind gp120, and small organic molecules that bind either gp120 or receptor.

[0070] The antibodies induced by the gp120 polypeptides can also be used to induce anti-idiotype antibodies that bind CC chemokines. These anti-idiotype antibodies can be screened for binding to an anti-gp120 polypeptide antibody and inhibiting gp120 from binding CC-CKR receptor. Such anti-idiotype antibodies mimic gp120 by binding to CC-CKR receptor. Such antibodies, preferably human antibodies, can be obtained in a number of ways, such as human antibodies from combinatorial libraries (e.g., Burton et al. Adv. Immunolo. (1994) 57:191-280). It is now possible to produce transgenic animals (e.g., mice) that are capable, upon immunization, of producing a full repertoire of human antibodies in the absence-of endogenous immunoglobulin production. For example, homozygous deletion of the antibody heavy-chain joining region (JH) gene in chimeric and germ-line mutant mice results in complete inhibition of endogenous antibody production. Transfer of the human germ-line immunoglobulin gene array in such germ-line mutant mice results in the production of human antibodies upon antigen challenge as described in Jakobovitis et al., Proc. Natl. Acad. Sci. USA 90: 2551 (1993); Jakobovits et al., Nature 362:255-258 (1993); Bruggermann et al., Year in Immuno. 7: 33 (1993).

[0071] Alternatively, phage display technology as described by McCafferty et al., Nature 348:552-553 (1990) can be used to produce human antibodies and antibody fragments in vitro from immunoglobulin variable (V) domain gene repertoires from unimmunized donors. According to this technique, antibody V domain genes are closed in-frame either into either a major or minor coat protein gene of a filamentous bacteriophage, such as M13 or fd, and displayed as functional antibody fragments on the surface of the phage particle. Because the filamentous particle contains a single-stranded DNA copy of the phage genome, selections based on the functional properties of the antibody also result in selection of the gene encoding the antibody exhibiting those properties. Phage display can be performed in a variety of formats as reviewed by, for example, Johnson, et al., Current Opinion in Structural Biology 3:564-571 (1993).

[0072] Several sources of V-gene segments can be used for phage display. Clackson et al., Nature, 352: 624-628 (1991) isolated a diverse array of anti-oxazolone antibodies from a small random combinatorial library of V genes derived from the spleens of immunized mice. A repertoire of V genes from unimmunized human donors (or embryonic cells) can be constructed. It has been demonstrated that antibodies to a diverse array of antigens (including self-antigens) can be isolated essentially following the techniques described by Marks et al., J. Mol. Biol., 222: 581-597 (1991), or Griffith et al., EMBO J., 12: 725-734 (1993).

[0073] In a natural immune response, antibody genes accumulate mutations at a high rate (somatic hypermutation). Some of the changes introduced confer higher affinity, and B cells displaying high-affinity surface immunoglobulin are preferentially replicated and differentiated during subsequent antigen challenge. This natural process can be mimicked by employing the technique known as “chain shuffling” (Marks et al., Bio/Technol. 10:779-783 [1992]). In this method, the affinity of “primary” human antibodies obtained by phage display can be improved by sequentially replacing the heavy and light chain V region genes with repertoires of naturally occurring variants (repertoires) of V domain genes obtained from unimmunized donors. This technique allows the production of antibodies and antibody fragments with affinities in the nM range. A strategy for making very large phage antibody repertoires has been described by Waterhouse et al., Nucl. Acids Res., 21: 2265-2266 (1993).

[0074] Accordingly, antibodies that bind CC-CKR can be obtained by screening antibodies or fragments thereof expressed on the surface of bacteriophage in combinatorial libraries or in other systems as described above with a gp120 monoclonal antibody that inhibits gp120 binding to receptor.

[0075] In addition to screening antibodies with a gp-120 antibody, random or combinatorial peptide libraries can be screened with either a gp120 antibody or the gp120 compounds of the invention. Approaches are available for identifying peptide ligands from libraries that comprise large collections of peptides, ranging from 1 million to 1 billion difference sequences, which can be screened using monoclonal antibodies or target molecules. The power of this technology stems from the chemical diversity of the amino acids coupled with the large number of sequences in a library. See for example, Scott et al., Cur. Open Biotechnol. 5(1):40-8 (1994); Kenan et al. Trends Biochem. Sci. (1994) 19(2):57-64. Accordingly, the monoclonal antibodies, preferably human monoclonals or fragments thereof, generated as discussed herein, find use in treatment by inhibiting or treating HIV infection or disease progression, as well as in screening assays to identify additional pharmaceuticals.

[0076] Production of gp120

[0077] gp120 for a vaccine can be produced by any suitable means, as with prior art HIV gp120 subunit vaccines. Recombinantly-produced or chemically synthesized gp120 is preferable to gp120 isolated directly from HIV for safety reasons. Methods for recombinant production of gp120 are described below.

[0078] Oligonucleotides encoding gp120 from breakthrough isolates and capable of expressing gp120 can be prepared by conventional means. For example, the nucleotide sequence can be synthesized. Alternatively, another HIV nucleotide sequence encoding gp120 can be used as a backbone and altered at any differing residues as by site-directed mutagenesis. Site-directed mutagenesis is described in Kunkel et al, Proc. Natl. Acad. Sci. (USA) 82:488-492 (1985) and Zoller et al, Nuc. Acids Res. 10:6487-6500 (1982) and is well known.

[0079] In a preferred embodiment, the nucleotide sequence is present in an expression construct containing DNA encoding gp120 under the transcriptional and translational control of a promoter for expression of the encoded protein. The promoter can be a eukaryotic promoter for expression in a mammalian cell. In cases where one wishes to expand the promoter or produce gp120 in a prokaryotic host, the promoter can be a prokaryotic promoter. Usually a strong promoter is employed to provide high-level transcription and expression.

[0080] The expression construct can be part of a vector capable of stable extrachromosomal maintenance in an appropriate cellular host or may be integrated into host genomes. Normally, markers are provided with the expression construct which allow for selection of a host containing the construct. The marker can be on the same or a different DNA molecule, desirably, the same DNA molecule.

[0081] The expression construct can be joined to a replication system recognized by the intended host cell. Various replication systems include viral replication systems such as those from retroviruses, simian virus, bovine papilloma virus, or the like. In addition, the construct may be joined to an amplifiable gene, e.g. the DHFR gene, so that multiple copies of the gp120 DNA can be made. Introduction of the construct into the host will vary depending on the construct and can be achieved by any convenient means. A wide variety of prokaryotic and eukaryotic hosts can be employed for expression of the proteins.

[0082] Preferably, the gp120 is expressed in mammalian cells that provide the same glycosylation and disulfide bonds as in native gp120. Expression of gp120 and fragments of gp120 in mammalian cells as fusion proteins incorporating N-terminal sequences of Herpes Simplex Virus Type 1 (HSV-1) glycoprotein D (gD-1) is described in Lasky, L. A. et al., 1986 (Neutralization of the AIDS retrovirus by antibodies to a recombinant envelope glycoprotein) Science 233: 209-212 and Haffar, O. K. et al., 1991 (The cytoplasmic tail of HIV-1 gp160 contains regions that associate with cellular membranes.) Virol. 180:439-441, respectively. A preferred method for expressing gp120 is described in the examples. In the examples, a heterologous signal sequence was used for convenient expression of the protein. However, the protein can also be expressed using the native signal sequence.

[0083] An isolated, purified gp120 polypeptide having one of the amino acid sequences illustrated in Table 1 can be produced by conventional methods. For example, the proteins can be chemically synthesized. In a preferred embodiment, the proteins are expressed in mammalian cells using an expression construct of this invention. The expressed proteins can be purified by conventional means. A preferred purification procedure is described in the examples.

[0084] gp120 Fragments

[0085] The present invention also provides gp120 fragments that are suitable for use in inducing antibodies for use in a vaccine formulation. A truncated gp120 sequence, as used herein, is a fragment of gp120 that is free from a portion of the intact gp120 sequence beginning at either the amino or carboxy terminus of gp120. A truncated gp120 sequence of this invention is free from the Cs domain. The CS domain of gp120 is a major immunogenic site of the molecule. However, antibodies to the region do not neutralize virus. Therefore, elimination of this portion of gp120 from immunogens used to induce antibodies for serotyping is advantageous.

[0086] In another embodiment, the truncated gp120 sequence is additionally free from the carboxy terminal region through about amino acid residue 453 of the gp120 V5 domain. The portion of the V5 domain remaining in the sequence provides a convenient restriction site for preparation of expression constructs. However, a truncated gp120 sequence that is free from the entire gp120 V5 domain is also suitable for use in inducing antibodies.

[0087] In addition, portions of the amino terminus of gp120 can also be eliminated from the truncated gp120 sequence. In particular, the truncated gp120 sequence can be free from the gp120 signal sequence. The truncated gp120 sequence can be free from the carboxy terminus through amino acid residue 111 of the gp120 C1 domain, eliminating most of the C1 domain but preserving a convenient restriction site. However, the portion of the C1 domain through the V2 cysteine residue that forms a disulfide bond can additionally be removed, so that the truncated gp120 sequence is free from the carboxy terminus through amino acid residue 117 of the gp120 C1 domain. In a preferred embodiment, the truncated gp120 sequence is free from the amino terminus of gp120 through residue 111 of the C1 domain and residue 453 through the carboxy terminus of gp120.

[0088] The truncated gp120 sequences can be produced by recombinant engineering, as described previously Conveniently, DNA encoding the truncated gp120 sequence is joined to a heterologous DNA sequence encoding a signal sequence.

[0089] It is understood that the application of the teachings of the present invention to a specific problem or situation is within the capabilities of one having ordinary skill in the art in light of the teachings contained herein. Examples of the products of the present invention and representative processes for their isolation, use, and manufacture appear-below, but should not be construed to limit the invention. All literature citations herein are expressly incorporated by reference.

EXAMPLES Materials and Methods

[0090] Specimen collection from human volunteers. Blood was collected from MN-rgp120-immunized individuals who were infected with HIV-1 while participating in Phase I (NIH Protocol AVEG 016) and Phase II (NIH Protocol AVEG 201) HIV-1 vaccine trials sponsored by the National Institutes of Health (NIH). The demographics of the subjects in the study, and the study design have been described in McElrath; Seminars in Cancer Biol. 6:1-11 (1995); McElrath et al.; Abstracts from Eighth Annual Meeting of the National Cooperative Vaccine Development Groups for AIDS. Bethseda, Md. 216 (1996). Specimens were obtained according to an informed consent protocol approved by the institutional review boards of the participating institutions. In the experimental section, the time of HIV-1 infection is specified with regard to data provided by the NIH AIDS Vaccine Evaluation Network where PCR (RNA) and/or serologic assays were used to detect HIV-1 infection.

[0091] Sample preparation for cloning HIV-1 envelope glycoproteins. Peripheral blood mononuclear cells (PBMCS) from HIV-1 infected vaccinees were prepared from heparinized venous blood by FICOLL-HYPAQUE gradient centrifugation. Cell number and viability were determined. After separation, PBMCs were washed twice in phosphate-buffered saline and suspended at a cell density of 6×10⁶ cells/ml in PCR lysis buffer (50 mM KCl, 10 mM Tris (pH 8.4), 2.5 mM MgCl₂, 0.1 mg/ml gelatin (Sigma), 0.45% NONIDET P40 detergent, 0.45% TWEEN 20 detergent (both detergents are commercially available from United States Biochemical Corp.) and 0.06 mg/ml Proteinase K (Gibco BRL) to lyse the cells. The lysate was incubated at 50-60° C. for 1 hour, followed by inactivation of the Proteinase K at 95° C. for 10 minutes. Lysates were shipped frozen and stored at −70° C. until use.

[0092] Polymerase chain reaction (PCR) amplification. Samples were subjected to two rounds of PCR amplification using the nested primers described below. In the first round, 25 μl aliquots of PBMC lysates (containing about 1 μg genomic DNA) were mixed with an equal volume of a PCR reaction mix containing 400 μM each dNTP, 200 μg/ml BSA (Sigma Chemical Corporation, RIA grade) and about 100 pmoles of each primer in 50 mM KCl, 20 mM Tris (pH 8.4) and 3 mM MgCl₂. After an initial 10 minute denaturation step at 95° C., 5 units of Taq polymerase (AMPLITAQ, Perkin Elmer Cetus) were added during an 55° C. soak step, and samples were overlayed with mineral oil.

[0093] The PCR profile was as follows: 2 cycles having 1 minute at 55° C., 2.5 minutes at 72° C. and 1 minute at 94° C., followed by 28 cycles with 30 seconds at 55° C., 2.5 minutes at 72° C. and 45 seconds at 94° C., and an extension step at 72° C. for 5 minutes.

[0094] Aliquots of 10 μl from the first-round reactions were re-amplified with appropriate nested primers in a final reaction volume of 100 μl, using either the reagents and profile described above or the reagents and profile described in the PCR Optimizer Kit (Invitrogen.) PCR reaction products were purified using QIAQUICK-spin columns (Qiagen Inc.) The primer pair used in the first round was either 120.os.F (5′-gggaattcggatccAGAGCAGAAGACAGTGGCAATGA with homologous sequence at position 6248-6270 of HIVPV22) (SEQ. ID. NO. 34) or JM11A (5′-ctcgag-CTCCTGAAGACAGTCAGACTCATCAAG at position 6048-6074) (SEQ. ID. NO. 35) in the forward direction [Kusumi et al.; J. Virol. 66:875 (1992)] combined with 120.os.R (5′-ggtctagaagctttaGCCCATAGTGCTTCCTGCTGCT-CC at position 7836-7859) (SEQ. ID. NO. 36) in the reverse direction. The internal nested primers were 120.BX.F (5′-gggcggatcctcgaGGTACCTGTRTGGAAAGAAGCA at position 6389-6410; R: A or G) (SEQ. ID. NO. 37) and 120.is.R (5′-ggtctagaagctttaTGCTCCYAAGAACCCAAGGAACA at position 7819-7841; Y: T or C) (SEQ. ID. NO. 38). Heterologous primer sequences are shown in lower case letters.

[0095] Subcloning of PCR products and the expression of recombinant envelope glycoproteins as fusion proteins. The HIV-1 envelope glycoprotein gp120 sequences were cloned and expressed as chimeric genes and fusion proteins, where the signal sequence and 27 amino acids from the mature N terminus of herpes simplex virus type 1 (HSV-1) were fused to the N-terminal sequences of the gp120 genes, corresponding to amino acid 13 of the mature gp120 sequence. PCR products containing gp120 sequences from the breakthrough specimens were cloned into pRK5 expression plasmid as chimeric genes using combinations of restrictions sites engineered into the heterologous PCR primer tails and the Xho I site engineered into the N-terminal sequence of HSV-1 gD.

[0096] The resulting double-stranded DNA was sequenced with Sequenase and the dGTP Reagent Kit (United States Biochemical Corp.). Sequences from glycoprotein D were provided to enhance expression and to provide a flag epitope to facilitate protein analysis, as described in Berman et al.; J. Virol. 7:4464-9 (1992); Nakamura et al.; AIDS and Human Retroviruses 8:1875-85 (1992); and Nakamura et al.; J. Virol. 67:6179-91 (1993).

[0097] Briefly, isolated DNA fragments generated by the PCR reaction were ligated into a plasmid (pRK.gD-5, pRKgDstop) designed to fuse the gp120 fragments, in frame, to the 5′ sequences of the glycoprotein D (gD) gene of Type 1 Herpes Simplex Virus (gD-1) and the 3′ end to translational stop codons. The fragment of the gD-1 gene encoded the signal sequence and 25 amino acids of the mature form of HSV-1 protein. To allow for expression in mammalian cells, chimeric genes fragments were cloned into the pRK5 expression plasmid (Eaton et al., Biochemistry 291:8343-8347 (1986)) that contained a polylinker with cloning sites and translational stop codons located between a cytomegalovirus promotor and a simian virus 40 virus polyadenylation site.

[0098] The resulting plasmids were transfected into the 293s embryonic human kidney cell line (Graham et al., J. Gen. Virol. 36:59-77 (1977)) using a calcium phosphate technique (Graham et al., Virology 52:456-467 (1973)). Growth conditioned cell culture media was collected 48 hr after transfection, and the soluble proteins were detected by ELISA or by specific radioimmunoprecipitation where metabolically labeled proteins from cell culture supernatants were resolved by sodium dodecyl sulfate polyacrylamide gel electrophoresis (PAGE) and visualized by autoradiography as described in Berman et al., J. Virol. 63:3489-3498 (1989) and Laemmli Nature 227:680-685 (1970).

[0099] Serologic assays. Sera were assayed for antibodies to rgp120, antibodies to synthetic gp120 V3 domain peptides corresponding to sequences from the gp120 V3 domain, and antibodies able to inhibit the binding of MN-rgp120 to cell surface CD4 using serologic assays described in Berman et al.; J. Virol. 7:4464-9 (1992); Nakamura et al.; AIDS and Human Retroviruses 8:1875-85 (1992); and Nakamura et al.; J. Virol. 67:6179-91 (1993). Endpoint titers of antibody binding to gp120 and V3 peptides were determined using three fold-serial dilutions of sera. The endpoint dilution titer was defined as the last dilution that produced an optical density value that was two times higher than the mean of the optical densities of 1:50 diluted, pooled, normal human sera. Antibody titers were calculated by a computer program that interpolated values between antibody dilutions. The inter-assay coefficient of variation of positive control standard sera was 35%.

[0100] Binding of monoclonal antibodies to rgp120 from breakthrough viruses. An ELISA similar to that described by Moore et al.; AIDS 3:155-63 (1989) was used to measure the binding of various monoclonal antibodies (MAbs) to rgp120s from breakthrough viruses. Briefly, Nunc-Immuno plates (Maxisorp, certified) were coated (100 μl at 5 μg/ml in PBS at 4° C. overnight) with an affinity-purified sheep polyclonal antiserum to a peptide at the C terminus of gp120 (D7324, International Enzymes, Fallbrook, Calif.). After washing once with PBS-0.05% TWEEN-20 detergent, the plates were blocked with PBS-1.0% BSA for 30-60 minutes at room temperature. Cell culture supernatants from 293s cells, diluted to contain equivalent amounts of the gD-rgp120 fusion protein, were added and incubated for 2 hours at room temperature followed by three washes with PBS-0.05% TWEEN-20 detergent. Various MAbs were diluted in PBS-1.0% BSA and 100 μL of the diluted MAbs were added to each well and incubated for 1 hour at room temperature.

[0101] The plates were washed 3 times and incubated with 100 μl of a horseradish peroxidase-conjugated second antibody (goat anti-mouse or anti-human IgG, Cappel) for 1 hour at room temperature. After 3 washes the plates were developed and the OD₄₉₂ (optical density at 492 nm) read in a plate reader. Growth conditioned cell culture supernatants were normalized by dilution based on binding by MAb 5B6 which is specific for HSV-1 glycoprotein D fusion protein.

[0102] Virus neutralization assays. The ability of vaccinee sera to inhibit infection of MT4 cells by HIV-1_(MN) was measured in a cytopathicity assay where cell viability was quantitated using a calorimetric indicator dye, as described in Robertson et al.; J. Virol. Methods 20:195-202 (1988). Briefly, a virus stock of HIV-1_(MN) (obtained from Dr. Michael Norcross, U.S. Food and Drug Administration) was prepared as the clarified supernatant from chronically infected H9/HIV-1_(MN) cell culture. H9 cells chronically infected with HIV-MN were pelleted and resuspended in one-tenth the original volume of medium. Cell-associated virus was released by the mechanical shearing effects of rapid vortexing of the cells as described in Wrin et al.; J. Virol. 69:39-48 (1995).

[0103] An amount of virus sufficient to ensure complete cell lysis killing in 7 days was incubated with three-fold serial dilutions of test antisera, and then used to challenge MT4 T-lymphoid cells in 10% FCS/RPMI-1640 cell culture media. The cultures were incubated for 7 days at 37° C. in 5% CO₂, and then cell viability was tested by the dye MTT, as described by Robertson et al.; J. Virol. Methods 20:195-202 (1988). Virus neutralization endpoints were quantitated by measurement of OD at 570-650 nm, and then the endpoint titers were calculated as the reciprocal of the antiserum dilution giving a signal that was two-fold above the control signal with unprotected (killed) cells. These titers were typically twice those calculated at 50% protection.

Results

[0104] Immunization history of infected subjects. Since 1992, 499 adults have been immunized with MN-rgp120 in Phase I trials in low or moderate risk individuals and in a Phase II clinical trial involving moderate to high risk individuals. The studies described herein entail the genetic and immunologic characterization of the first seven of nine individuals who became infected with HIV-1 through high risk behavior during the course of these trials. A listing of the trials and summary of the status of the vaccinees is presented in Table 2A. A listing of the analysis of the vaccinees is presented in Table 2B. TABLE 2A Description of Vaccinees Infected with HIV-1 After Immunization with MN-rgp120 ‡Antigen dose/ Study No. Case No. *Risk Group Adjuvant 016 C6 M/H 300/QS21 016 C8 M/H 600/QS21 016 C15 M/H 300/QS21 201 C7 M/H 600/Alum 201 C11 M/H 600/Alum 201 C10 M/IDU 600/Alum 201 C17 M/IDU 600/Alum

[0105] TABLE 2B Description of Vaccinees Infected with HIV-1 After Immunization with MN-rgp120 Injection Injections Time of

Interval: Case Schedule before HIV-1+ to HIV-1+ No. (months) HIV-1+ (months) (months) C6 0, 1, 10.5 2 4.00 2.00 C8 0, 1 2 4.00 3.00 C15 0, 1, 2 3 6.25 4.00 C7 0, 1, 6, 12 3 9.25 3.00 C11 0, 1, 6, 12 4 19.50 6.75 C10 0, 1, 6, 19 3 19.50 13.50 C17 0, 1, 6, 18 4 24.75 6.25

[0106] Three of the infections occurred in a Phase I trial (NIH Protocol AVEG 201) that compared the safety and immunogenicity of MN-rgp120 formulated in two different adjuvants (alum and QS21), and four of the infections occurred in a Phase II trial aimed at establishing the safety and immunogenicity of MN-rgp120 in various high risk groups (e.g., intravenous drug users, homosexual and bisexual males, and partners of HIV-1 infected individuals).

[0107] Of the seven infections studied (Table 3), two (C6 and C8) occurred after two injections, three (C7, C10 and C15) occurred after three injections, and two (C11 and C17) occurred after receiving the four scheduled injections. The interval between receiving the last immunization and becoming infected was 2 to 13.5 months. TABLE 3 Peak Post Boost MN-rgp120 Antibody Titers in Vaccinees that Became Infected with HIV-1 Injections C6 C8 C15 C7 C11 C10 C17 1 <50 2185 79 <50 1890 na na 2 21539 10125 na 413 32696 7771 7056 3 # # 4460 9707 34728 11627 18413 4 # # # # # # 11340

[0108] Antibody response to gp120 in vaccinated individuals. The magnitude and specificity of the antibody response to MN-rgp120 was measured by ELISA in all infected individuals throughout the course of the immunization regime (FIG. 1). Five of the seven subjects exhibited normal antibody response kinetics that included a small but reproducible primary response (1:100-1:2,000) and a strong secondary (booster) response (titters ranging from 1:7,000-1:32,000), and antibody responses following third and fourth injections that were similar or marginally higher than those achieved after the second immunization (FIG. 1, Table 3).

[0109] The antibody response observed in C7 (FIG. 1C) was unusual in that no antibodies were detectable after the primary injection and a titer of only 1:350 was detected after the second injection. It thus appeared that C7 did not respond to the primary immunization, and that the antibody response obtained after the second injection represented a primary immune response. Consistent with this hypothesis, the third injection elicited a titer of only 1:9,707, typical of those normally seen after two immunizations.

[0110] An a typical antibody response was also seen in subject C15 (FIG. 1G) who was immunized according to an accelerated immunization schedule of 0, 1, and 2 months. As expected, the antibody titer seen in this subject (1:4,460) was at the low end of what is typically achieved after two immunizations and was far below normal values for three immunizations. The lack of an effective booster response after the third immunization of C15 was not surprising in view of previous studies where an accelerated 0, 1, and 2 month immunization schedule in baboons [Anderson et al.; J. Infect. Dis. 160:960-9 ((1989)] similarly prolonged the secondary response and failed to elicit an effective tertiary booster response.

[0111] Retrospective analysis of serum and plasma from subjects C6 (FIG. 1A) and C8 (FIG. 1B) indicated that they became infected with HIV-1 at some point between the second and third immunizations. Serologic evidence of HIV-1 infection was evident in the gp120 antibody assays where the titers failed to decline two weeks after the second injection and instead formed an uncharacteristic high titer plateau (FIGS. 1A and 1B). A similar plateau in MN-rgp120 titer after the third injection, suggested that subject C7 became infected around week 36, approximately 16 weeks after receiving the third injection (FIG. 1C). Subjects C10 (FIG. 1E), C11 (FIG. 1D), C15 (FIG. 1G), and C17 (FIG. 1F) developed unexpected increases in gp120 titers, typical of HIV-1 infection, after either the third or fourth immunizations. The data obtained demonstrate that immunologic priming for MN-rgp120 antibody responses is insufficient to provide universal protection from HIV-1 infection.

[0112] Antibody titers to the V3 domain. To further characterize the antibody response to gp120, antibody titers were measured to a synthetic V3 domain peptide of MN-rgp120 containing the principal neutralizing determinant (PND). Five of the seven subjects developed good V3 titers (1:400 to 1:4000) after the second immunization, however two subjects (C7 and C15) required three immunizations before developing significant tiers (FIGS. 1C and 1G). As had been observed previously (11), the peak V3 titers in some individuals (e.g. C11, C10, C17) appeared to decline with each successive immunization (FIGS. 1D, 1E, and 1F). After HIV-1 infection, two patterns of V3 reactivity were observed. Three subjects (C6, C7, and C10) showed large increases in titer to V3 domain peptides (FIGS. 1A, 1C, and 1E) whereas C8 (FIG. 1B) showed a large decrease in V3 titer. At the time of analysis, the data were insufficient to draw any conclusions regarding the changes in V3 titers in response to HIV-1 infection in subjects C11, C15 and C17.

[0113] The results obtained indicate that the ability to form antibodies reactive with the V3 domain at various time-points prior to HIV-1 infection is not a valid correlate of protective immunity against all strains of HIV-1.

[0114] CD4 Inhibition titers. Antibodies that block the binding of gp120 to CD4 represent a heterogeneous class of virus neutralizing antibodies. Some are known to bind to the C4 domain of gp120 [Nakamura et al.; J. Virol. 67:6179-91 (1993); Anderson et al.; J. Infect. Dis. 160:960-9 ((1989)], and some are known to recognize conformation dependent discontinuous epitopes [Berman et al.; J. Virol. 7:4464-9 (1992); Nakamura et al.; J. Virol. 67:6179-91 (1993); McKeating et al.; AIDS Research and Human Retroviruses 8:451-9 (1992); Ho et al.; J. Virol. 65:489-93 (1991); Barbas et al.; Proc. Natl. Acad. Sci. USA 91:3809-13 (1994)].

[0115] One way to detect antibodies to both types of epitopes is to measure the ability of vaccinee sera to prevent the binding of [¹²⁵I]-labeled gp120 to cell surface CD4 [[Nakamura et al.; AIDS and Human Retroviruses 81875-85 (1992); Nakamura et al.; J. Virol. 67:6179-91 (1993)]. CD4 blocking titers were detected in all seven of the vaccinees prior to infection (FIG. 2) with peak titers that ranged from 1:10-1:300. At the last time point prior to infection, the CD4 titers in five of the seven vaccinees was low (1:30 or less). One vaccinee (C17), however, possessed a CD4 blocking titer of about 1:300 prior to infection (FIG. 2F). Thus, the lack of antibodies that block the binding of MN-rgp120 to CD4 cannot account for all of the infections. Large increases in CD4 blocking titers (1:100-1:1,000) were seen in five of the seven subjects after HIV-1 infection. These included vaccinees C6, C7, C8, C10, and C11. These results demonstrate that the CD4 blocking titers elicited by MN-rgp120 were lower than those elicited by natural infection.

[0116] Virus neutralizing activity. The virus neutralizing activity of antisera from MN-rgp120-immunized subjects was measured using a calorimetric assay that measured the viability of MT-4 cells after incubation with antibody treated virus (HIV-1_(MN)). Since the actual date of infection was not known for any of the breakthrough infections, and serum samples were collected infrequently, the magnitude of the neutralizing antibody response at the time of infection is not known for any of the vaccinees.

[0117] Of the seven infections examined, the serum sample closest to the time of infection was that obtained from C7, where a neutralizing titer of 1:15 to HIV-1_(MN) was present three weeks prior to detection of HIV-1 infection (Table 4). In all other cases, however, the interval between the last injection and the time of infection was 10 to 25 weeks. TABLE 4 Neutralization Activity of Sera from Vaccinees Infected with HIV-1 Week C6 C8 C15 C7 C11 C10 C17 0  <10*  <10*  <10*  <10*  <10*  <10*  <10* 2  <10  <10  <10 — — — — 4  <10*  <10* nd*  <10*  <10*  <10*  <10* 6    10    80 —  <10    30   150   150 8 — — nd* — — — — 10 — —    35 — — — — 15 — — —  <10 — — — 16   150#   250# — —    30    10  <10 24   150#  <10*    20*  <10*  <10* 26    70   500   200   400 30 — —    40   100 33    15 — — — 35 —   100 — — 36    30# —    10    40 52    30*  <10  <10 54   250 — — 57   100 — — 63    90 — — 64 — —  <10 77    40# — — 78   500#    10* 80   100 84    60 90   150 104   150#

[0118] When sera from the two early infections were examined (Table 4), one individual (C6) had a peak neutralizing titer of 1:10 ten weeks prior to detection of HIV-1 infection, whereas the other individual (C8) had a neutralizing titer of 1:80 ten weeks prior to detection of HIV-1 infection. Subject C15, who was immunized according to an accelerated immunization schedule, developed a neutralizing titer of 1:35 after the third injection, 14 weeks prior to HIV-1 infection. Subject C10, who had a peak neutralizing titer of 1:200 following the third immunization (week 24), had no detectable titer at week 52, six months prior to the first indication of HIV-1 infection (week 78).

[0119] Subject C11 possessed a neutralizing titer of 1:90 at fourteen weeks prior to detection of HIV-1 and a peak titer of 1:500 following the third immunization. Similarly vaccinee C17 had a neutralizing titer of 1:150 fourteen weeks prior to infection and a peak titer of 1:400 at two weeks after the third immunization.

[0120] Based on the rate of decay of the gp120 response of approximately two months [Belshe et al.; JAMA 272(6):475-80 (1994)], as well as the observation that neutralizing titers of 1:150 decayed to 1:10 in 10 weeks in vaccinees C10 and C17, it appears that neutralizing titers in C8, C15, C11, and C17 could have declined to 1:10 or less in the intervals between the last pre-infection serum sample and the time of HIV-1 detection.

[0121] The results of these studies demonstrated that all vaccinees developed some level of virus-neutralizing antibodies at some time prior to HIV-1 infection, and that the magnitude of the neutralizing response was probably low at the time of infection. In general, the magnitude of the virus-neutralizing response observed in the individuals that became infected with HIV-1 was comparable to that seen in non-infected vaccinees as described in Belshe et al.; JAMA 272(6):475-80 (1994).

[0122] Sequences of Viruses. To evaluate the similarity of the breakthrough viruses with the vaccine antigen, nucleotide sequences for gp120 from all seven breakthrough viruses were determined. Envelope glycoprotein genes were amplified from proviral DNA using the polymerase chain reaction. Sequences were obtained by direct amplification of DNA from lysates of gradient-purified lymphocytes obtained directly from patient blood without any intermediate tissue culture or amplification step.

[0123] A listing of the complete gp120 sequences (two clones per specimen) is provided in FIG. 3. All seven envelope glycoproteins possessed sequences typical of subtype (lade) B viruses. The overall homology with MN-rgp120 ranged from 69-80% (Table 5). TABLE 5 Comparison of MN-rgp120 Sequence with Sequences from Infected Vaccinees* MN C6.1 C8.3 C7.2 C11.5 C10.5 C17.1 C15.2 MN 100 79 78 70 75 69 80 72 C6.1 100 78 70 81 75 90 79 C8 .3 100 68 80 76 84 83 C7.2 100 80 73 76 73 C11.5 100 75 70 80 C10.5 100 70 72 C17.1 100 87 C15.2 100

[0124] Interestingly, a high percentage (four of seven) of the breakthrough viruses differed from MN-rgp120 by 25-30% [Myers et al.; Retroviruses and AIDS Database, Los Alamos National Laboratory (1992 and 1995)]. Historically this degree of sequence variation is typical of inter-subtype (intra-clade) variation rather than intra-subtype variation which is expected to be in the 10-20% range [Myers et al.; Retroviruses and AIDS Database, Los Alamos National Laboratory (1992 and 19950]. Of the viruses with the greatest homology to MN-rgp120, two (C6 and C8) occurred as early infections, prior to complete immunization, and one (C17) occurred as a late infection.

[0125] Polymorphism in the V3 Domain. Of particular interest were polymorphisms in regions known to contain epitopes recognized by virus neutralizing antibodies. The best characterized neutralizing epitope, the principal neutralizing determinant (PND), occurs at the tip of the V3 loop. In subtype B viruses, approximately 60% possess the MN serotype-defining signature sequence, IGPGRAF (SEQ. ID. NO. 39), based on identity with the prototypic MN strain of HIV-1 [Berman et al.; J. Virol. 7:4464-9 (1992); Myers et al.; Retroviruses and AIDS Database, Los Alamos National Laboratory (1992 and 1995); La Rosa et al.; Science 249:932-5 (1990)].

[0126] Three of the viruses (C6, C8, and C17) possessed the MN serotype signature sequence (FIG. 3). In contrast, four viruses possessed sequences with radical amino acid substitutions in the PND [IGPGRAW (C7), LGPGSTF (C11), IGPGRVL (C10), and IGPGSAF (C15)] (SEQ. ID. NOs. 40-43, respectively), and therefore were classified as “non-MN like” viruses. Of note, each of the four “non-MN-like” sequences were rare (Table 6) and were not typical of the most common “non-MN” variants of subtype B viruses [Myers et al.; Retroviruses and AIDS Database, Los Alamos National Laboratory (1992 and 1995)]. TABLE 6 Frequency of Polymorphisms at the Principal Neutralizing Determinant in HIV-1 Infected Individuals Immunized with MN-rgp120* Ob- served Dataset Frequency V3 Sequence Fre- GNE LANL LANL.1 LaRosa Sequence n quency (n = 52) (n = 519) (n = 160) (n = 245) GPGRAF 3 0.42 0.67 0.57 0.66 0.60 GPGRAW 1 0.14 0.03 0.013 0.06 0.010 GPGRVL 1 0.14 <0.02 0.004 <0.006 <0.008 GPGSTF** 1 0.14 <0.02 <0.002 <0.006 <0.004 GPGSAF 1 0.14 0.02 0.011 <0.006 <0.004

[0127] The prevalence of viruses with PND sequences matching the breakthrough viruses ranged from a high of 1.3% (C7) to a low of 0.2% (C11) in a listing of 519 subtype B sequences compiled by the Los Alamos National Laboratory [Myers et al.; Retroviruses and AIDS Database, Los Alamos National Laboratory (1992 and 1995)]. Similarly low frequencies were observed in three other independently derived data sets (Table 6). The occurrence of these sequences did not differ significantly between data sets collected prior to 1985 [La Rosa et al.; Science 249:932-5 (1990)] and data collected 1992, or from a set of 160 epidemiologically unlinked individuals (B. Korber, personal communication). All four sets of data agreed that the prevalence of viruses with MN-like PND sequences was in the range of 60%. Based on this data, four of the seven breakthrough infections were determined to be caused by viruses that fell outside of the spectrum of viruses that the vaccine was expected to prevent.

[0128] Other features of breakthrough virus V3 domains. Like MN-rgp120, the V3 domains of all of the breakthrough viruses were 36 amino acids in length. However, all seven viruses differed from MN-rgp120 with respect to the number of glycosylation sites and with respect to the syncytium-inducing (SI) signature sequence.

[0129] The sequence of MN-rgp120 is somewhat unusual [Myers et al.; Retroviruses and AIDS Database, Los Alamos National Laboratory (1992 and 1995)] in that it lacks an N-linked glycosylation site at position 306 in the V3 domain. The lack of this glycosylation site does not appear to be antigenically significant since antisera to MN-rgp120 are known to neutralize a variety of viruses (e.g. SF-2, DU6587-5, DU4489-5, CC) that possess a glycosylation site at this position [Berman et al.; J. Virol. 7:4464-9 (1992)]

[0130] In addition, the V3 domain of MN-rgp120 possessed sequence polymorphisms (R at position 311, K at position 324, K at position 328) typical of syncytium inducing viruses [Fouchier et al.; J. Virol. 66:3183-87 (1992)], whereas all seven breakthrough viruses possessed sequences associated with non-syncytium-inducing viruses. Syncytium-inducing viruses have been associated with rapid disease progression [Tersmette et al.; J. Virol. 62:2026-32 (1988)] and T cell tropism [O'Brien et al.; Nature (London) 348:69-73 (1990); Shioda et al.; Nature (London) 349:167-9 (1991)]. To date viruses with these properties have not been recovered from any of the MN-rgp120 immunized volunteers.

[0131] Polymorphism in the V1, V2 and C4 domains. Previous investigations have identified additional neutralizing epitopes in the V1, V2 and C4 domains of gp120 [Nakamura et al.; J. Virol. 67:6179-91 (1993); McKeating et al.; AIDS Research and Human Retroviruses 8:451-9 (1992); Ho et al.; J. Virol. 65:489-93 (1991); Barbas et al.; Proc. Natl. Acad. Sci. USA 91:3809-13 (1994); McKeating et al.; J. Virol. 67:4932-44 (1993); Moore et al.; J. Virol. 67:6136-6151 (1993); Davis et al.; J. Gen. Virol. 74:2609-17 (1993)].

[0132] The best characterized of these neutralizing epitopes is in the C4 domain which has attracted special attention because antibodies binding to this area are known to block the binding of gp120 to CD4 [Moore et al.; AIDS 3:155-63 (1989); McKeating et al.; AIDS Research and Human Retroviruses 8:451-9 (1992)]. Because the epitope is located in a conserved (C) domain, naturally-occurring polymorphism in this region is far more limited than in other neutralizing epitopes. Nakamura et al.; J. Virol. 67:6179-91 (1993) reported that the binding of a number of neutralizing MAbs was dependent on K at position 429.

[0133] Comparison of the sequence of MN-rgp120 with other strains of HIV-1 showed that a common polymorphism, involving the substitution of E for K, occurs at this position. Indeed, substrains of the same virus isolate often show polymorphism at this position. The HXB2 substrain of HIV-1_(MN) contains K at position 429, whereas the BH10, IIIB, and LAV substrains of the HIV-1_(LAI) contain E at this position [Nakamura et al.; J. Virol. 67:6179-91 (1993)]. Similarly, the 1984 isolate of HIV-1_(MN) exhibited E at this position, while the 1990 isolate of HIV-1_(MN), used to produce MN-rgp120, possessed K at this position.

[0134] When the sequences of the infected vaccine recipients were examined (FIG. 3), the virus from subject C17, like MN-rgp120 contained K at position 429, whereas the six other viruses that differed from the vaccine immunogen possessed E at this position. These results demonstrated that six of the seven breakthrough viruses differed from the vaccine immunogen at the CD4-blocking, neutralizing epitope in the C4 domain of gp120.

[0135] Studies with monoclonal antibodies have defined neutralizing epitopes in the V1 and V2 domains of gp120 [McKeating et al.; J. Virol. 67:4932-44 (1993); Moore et al.; J. Virol. 67:6136-6151 (1993); Davis et al.; J. Gen. Virol. 74:2609-17 (1993)]. Like the polymorphisms that occur in the C4 domain, the V2 domains exhibit several common polymorphisms that affect the binding of virus neutralizing antibodies. One such polymorphism occurs at position 171 which is critically important for the binding of murine MAb 1025, whereas residue 187 is important for the binding of MAb several MAbs represented by 1088.

[0136] When the V2 domain sequences were examined (FIG. 3), all of the infected-vaccinee viruses differed from MN-rgp120 in that R replaced G at position 171 and I or V replaced E at position 187. Antibodies recognizing these adjacent sites in the V2 domain of MN-rgp120 would not be expected to neutralize viruses with radical amino acid substitutions at these position. Thus, all seven breakthrough viruses differed from MN-rgp120 at a neutralizing epitope in the V2 domain of gp120.

[0137] Other neutralizing epitopes have been reported in the Vi domain of gp120 [O'Brien et al.; Nature (London) 348:69-73 (1990); McKeating et al.; J. Virol. 67:4932-44 (1993)]. Although the neutralizing epitopes in the V1 domain of MN-rgp120 have not been characterized, the polymorphism seen among the breakthrough viruses in this region was interesting. Particularly striking (FIG. 3) was that the length of this domain ranged from 20 amino acids (C17) to 45 amino acids (C6), and the number of N-linked glycosylation sites ranged from 2 to 6. In contrast, the Vi domain of MN-rgp120 is 31 amino acids in length and encodes three N-linked glycosylation sites.

[0138] Although examination of sequence databases suggest that variation in the V2 region is comparable to the V1 region, the V2 region of the breakthrough viruses showed less variation than expected. Specifically, the length of the V2 region ranged from 36 amino acids (C7) to 39 amino acids in length, with six of seven viruses containing three N-linked glycosylation sites in this domain. A high degree of polymorphism was found in the V4 region where sequences ranged from 26 (C10) to 33 (C15, C7) amino acids in length and contained either 4 or 5 N-linked glycosylation sites.

[0139] Antigenicity of envelope glycoproteins from breakthrough viruses. To determine the significance of sequence variation on glycoprotein antigenicity, recombinant gp120 was prepared from the viruses of all seven infected vaccinees (FIG. 4). In these studies a series of MAbs was assembled and their binding to MN-rgp120 was compared to that of rgp120 from the vaccinee isolates by ELISA (Table 7). TABLE 7 Relative Reactivity* of MAb Binding to rgp120 from Infected Subjects Compared with Binding to MN-rgp120 V3 Discontinuous C8 V2 gp120 1034 50.1 1.5E 1025 1024 1088 MN 1.0 1.00 1.00 1.00 1.00 1.00 C6.1 0.37 0.37 0.17 0.00 0.00 0.00 C6.5 0.33 0.33 0.75 0.00 0.00 0.00 C8.3 0.11 0.37 0.38 0.00 0.00 0.00 C8.6 0.14 0.34 0.29 0.00 0.00 0.00 C7.2 0.47 0.60 0.71 0.00 0.00 0.00 C11.5 0.00 0.00 0.17 0.00 0.00 0.00 C11.7 0.00 0.00 0.17 0.00 0.00 0.00 C10.5 0.33 0.40 0.46 0.24 0.03 0.04 C10.7 0.42 0.48 0.50 0.29 0.07 0.09 C17.1 0.33 0.52 0.33 0.00 0.30 0.07 C17.3 0.37 0.56 0.33 0.00 0.38 0.06 C15.2 0.00 0.47 0.92 0.00 0.00 0.00 C15.3 0.00 0.37 0.63 0.00 0.00 0.00

[0140] In control experiments, the binding of MAb 5B6 (which is specific for the HSV gD-1 flag epitope fused to the N terminus of all of the rgp120 protein) was used to standardize the amount of gp120 from each isolate (FIG. 5A). These studies demonstrated that the assay was carried out under conditions where equivalent amount of rgp120s were captured onto wells of microtiter plates.

[0141] The antigenic structure of the V3 domain was examined using the 1034 MAb (isolated from mice immunized with MN-rgp120 as described in Nakamura et al.; J. Virol. 67:6179-91 (1993) and the 50.1 MAb (prepared from mice immunized with a synthetic V3 domain peptide as described in Rini et al.; Proc. Natl. Acad. Sci. USA 90:6325-9 (1993). Both MAbs are known to exhibit potent virus neutralizing activity. When binding to the recombinant proteins was examined, the MAb binding to MN-rgp120 was at least 10-fold greater than to any of the breakthrough virus envelope proteins (FIGS. 5B and C). Surprisingly, rgp120 from the three patient isolates (C8, C6, and C17) that possessed the MN serotype-defining sequence, IGPGRAF (SEQ. ID. NO. 39), varied from one another in their MAb binding activity. Thus, the binding of MAb 1034 and MAb 50.1 to rgp120 from C17 was significantly greater than the binding to rgp120s from C6 and C8.

[0142] A distinction in the epitopes recognized by these MAbs was evident since C6-rgp120 and C8-rgp120 gave comparable binding with 50.1, whereas 1034 bound better to the C6-derived protein than the C8-derived protein. The poorest MAb reactivity was with rgp120s from C11 and C15. This result was consistent with sequence analysis demonstrating that these two viruses both possessed the radical substitution of S for R at position 18 in the V3 domain. Surprisingly, both of these MAbs exhibited better than expected binding to rgp120 from the C7 and C10 viruses. Like MN-rgp120, both proteins contained the penta-peptide, IGPGR sequence (SEQ. ID. NO. 44) in the V3 loop, but differed from MN-rgp120 in that V and L replaced A and F at positions 319 and 320 in gp120 from C10, and W replaced F at position 320 in gp120 from C7. These results indicate that R at position 318 is essential for the binding of these two MAbs, and that the epitopes recognized by 1034 and 50.1 are not completely destroyed by the hydrophobic substitutions at positions 319 and 320.

[0143] As predicted from the sequence data, there was little if any binding to the breakthrough virus rgp120s using MAbs (1088 and 1025) directed to the V2 region of MN-rgp120 Also consistent with sequence data was the observation that MAb 1024 directed to the C4 domain of MN-rgp120 gave some reactivity with C17-rgp120 which, like MN-rgp120 contained K at position 429, but gave no reactivity with the other isolates that contained E at residue 429.

[0144] Together, these studies demonstrated that the antigenic structure of all seven breakthrough viruses differed from the vaccine immunogen at three well characterized neutralizing epitopes.

[0145] A totally different pattern of reactivity was observed with the human hybridoma, MAb 15e, prepared from an HIV-1 infected individual as described in Ho et al.; J. Virol. 65:489-93 (1991). With this MAb, the greatest binding was achieved with MN-rgp120 and rgp120 from C7, and the poorest reactivity was seen with the two clones of rgp120 from the C11. Moderate, but comparable reactivity was seen with rgp120s from the C10 and C17.

[0146] These results demonstrate that the 15e epitope is polymorphic, and that the epitope is conserved on MN-rgp120 and rgp120 from C7, but has been lost on rgp120s from C11. Interestingly, the two different clones of gp120 derived from C6 gave strikingly different patterns of antibody binding. Thus, rgp120 from clone C6.5 exhibited strong reactivity with this antibody, whereas rgp120 from clones C6.1 exhibited significantly weaker activity with this MAb. Comparison of sequence data (FIG. 3) showed that the two C6 clones differed at 6 amino acid positions. Based on comparative binding to the other viral proteins of known sequence, it appeared that the substitution of K for 1 at position 351 in the C3 domain of gp120 could account for the difference in binding activity. This result is also consistent with both clones of C11 similarly containing a positively- charged K at this position, and also being poorly reactive with this MAb. Alternatively, a T for I substitution at position 439 in the C4 domain could account for the difference in 15e binding between C6.1 and C6.5. Although the inability of the two C11 clones to bind 15e cannot be explained by polymorphism at this position in the C4 domain, they could be affected by the adjacent T for M substitution at position 434.

Discussion

[0147] In these studies, the viruses and immune responses in seven of nine vaccinees who became infected with HIV-1 vaccine through high risk activity while participating in Phase I or Phase 2 trials of MN-rgp120, a candidate HIV-1 vaccine were analyzed. Such infections would be expected to occur for one of two reasons: 1) lack of sufficient immune response at the time of infection; or 2) infection with viruses that fall outiside of the antigenic spectrum expected to be covered by the vaccine immunogen. The data indicate that both explanations may be involved with the infections observed (Table 8). TABLE 8 Summary of Breakthrough Infections MN-rgp120 Homoloqous to MN-rgp120 Adequate Homology V3 C4 V2 Case No. Immunization (%) PND Epitope Epitope C6 − 79 + − − C8 − 78 + − − C15 − 72 − − − C7 − 70 − − − C11 + 75 − − − C10 + 69 − − − C17 + 80 + + −

[0148] Two of the infections occurred in individuals who failed to receive the minimum three doses of vaccine typically required for the induction of protective immunity with protein subunit vaccines (e.g. hepatitis B virus formulated in alum adjuvant as described in Francis et al.; Ann. Int. Med. 97:362-6 (1982). Two additional breakthrough infections occurred in vaccinees who had weak or undetectable primary (C7) and booster (C15) responses. Of the three individuals who became infected with HIV-1 after receiving three or more productive immunizations (C10, C11, and C17), at least two, and possibly all three, appear to have become infected more than six months after receiving their last immunization. Because antibody titers to MN-rgp120 typically decay with a half-time of 2 to 2.5 months [Belshe et al.; JAMA 272(6):475-80 (1994); Berman et al.; AIDS 8:591-601 (1994)], antibody titers would be expected to have decayed at least eight-fold and possibly as much as sixty four-fold at the time of infection. Thus, the lack of a sufficient immune response at the time of infection represents a potential explanation for at least six of the seven breakthrough infections.

[0149] Data from vaccine efficacy studies in gp16 immunized chimpanzees [McElrath et al.; Longitudinal Vaccine-Induced Immunity and Risk Behavior of Study Participants in AVEG Phase II Protocol 201. In: Abstracts from Eighth Annual Meeting of the National Cooperative Vaccine Development Groups for AIDS. Bethseda, Md. 1996:216] challenged with HIV-1, and gp120-immunized rhesus macaques challenged with a chimeric SIV/HIV-1 virus (SHIV) suggest that the magnitude of the neutralizing antibody response at the time of infection is a critical correlate of protective immunity. If maintaining neutralizing antibody titers proves to be a valid correlate of protective immunity in humans, then formulations (e.g. novel adjuvants) or immunization regimes (frequent boosting) designed to maximize the antibody responses may be required to achieve long lasting protection. Use of a booster every six months may be advantageous.

[0150] The other likely explanation for the late infections is the antigenic difference between the vaccine and the breakthrough virus envelope glycoproteins. This explanation is supported by the observation that four of the seven breakthrough viruses possessed envelope glycoproteins that differed from the MN-rgp120 by 25-30% at the amino acid level. Differences of this magnitude have historically [Myers et al.; Retroviruses and AIDS Database, Los Alamos National Laboratory (1992 and 1995)] been associated with inter-subtype variation and far exceeds the average 10-20% variation expected for viruses within the same subtype.

[0151] Although the biologic significance of sequence variation in many regions of the envelope glycoprotein is unclear, polymorphism at neutralizing epitopes is an important factor that affects vaccine efficacy. Previous studies [Salmon-Ceron et al.; AIDS Res. and Human Retroviruses 11:1479-86 (1995); Javaherian et al.; Science 250:1590-3 (1990)] have demonstrated that the breadth of neutralizing activity that could be elicited by HIV-1 envelope derived vaccines was critically dependent on the sequence of epitopes in the V3 domain (e.g.; the PND). Thus, candidate vaccines based on the LAI strain of HIV-1 (the prototypic “non-MN-like” subtype B virus), exhibited little or no cross neutralizing activity with subtype B viruses, whereas vaccines that contained the “MN-like-” PND sequence (IGPGRAF) (SEQ. ID. NO. 44) exhibited broad cross neutralizing activity. That four of the seven breakthrough viruses possessed envelope glycoproteins with radical amino acid substitutions in the PND is consistent with the explanation that differences in antigenic structure explain some of these infections.

[0152] Over the last few years, it has become clear that polymorphism among “MN-like” viruses occurs at neutralizing epitopes outside of the PND. The best example occurs in the C4 domain where two antigenically distinct variants are distinguished by the presence of either K or E at position 429 [Moore et al.; AIDS 3:155-63 (1989)]. Because six of the seven breakthrough viruses differed from the vaccine strain in that they contained E rather than K at position 429, antibodies raised to the C4 domain of MN-rgp120 were unlikely to neutralize the viruses infecting in six of the seven vaccinees.

[0153] Other neutralizing epitopes are known to be present in the V1 and V2 domains of gp120. Although these regions are highly variable, due to insertions and deletions, neutralizing epitopes have been described by McKeating et al.; J. Virol. 67:4932-44 (1993); Moore et al.; J. Virol. 67:6136-6151 (1993); and Davis et al.; J. Gen. Virol. 74:2609-17 (1993). Several of these epitopes overlap an amino terminal sequence of the V2 domain containing the tri-peptide sequence RDK at positions corresponding to 142 to 144 of MN-rgp120 [McKeating et al.; J. Virol. 67:4932-44 (1993); Moore et al.; J. Virol. 67:6136-6151 (1993)]. Like the C4 epitope, variation in this sequence is known to occur between different substrains derived from the same parental isolate. Since all seven breakthrough viruses differed from MN-rgp120 in that they possessed the RDK sequence, rather than the GDK sequence present in the vaccine antigen, neutralizing antibodies to the V2 domain of MN-rgp120 would not have been expected neutralize any of the viruses recovered from the vaccinees immunized with MN-rgp120.

[0154] Although polymorphisms at neutralizing epitopes might account for the lack of protection in most of the infections, this does not appear to explain the infection of vaccinee C17, who was infected by a virus that matched MN-rgp120 in the V3 and C4 domains. If a difference in sequence was responsible for the lack of protection in this case, the critical difference might relate to the unusual sequence in the V1 domain of gp120 from this breakthrough virus. Several studies have shown that the Vi domain possesses epitopes recognized by virus neutralizing monoclonal antibodies [McKeating et al.; J. Virol. 67:4932-44 (1993); Davis et al.; J. Gen. Virol. 74:2609-17 (1993); Kayman et al.; J. Virol. 68:400-410 (1994)].

[0155] Although far less is known about the V1 epitopes relative to other neutralizing sites, the V1 epitopes appear to be conformation-dependent, and antisera from HIV-1 infected individuals recognize epitopes in the V1 and V2 domains [McKeating et al.; J. Virol. 67:4932-44 (1993); Kayman et al.; J. Virol. 68:400-410 (1994)]. The V1 sequence of the virus from C17 is noteworthy because it is smaller and contains fewer N-linked glycosylation sites than that of MN-rgp120 or any of the other breakthrough viruses. By the same token, the envelope glycoproteins from C11 and C6 are noteworthy because they are significantly larger and contain more glycosylation sites than MN-rgp120 or the other breakthrough viruses.

[0156] While differences in amino acid sequence can provide clues to differences in antigenic structure, the consequences of such polymorphism can only be proven through antibody binding studies. To correlate differences in sequence with differences in antigenic structure, gp120 from two clones each of all seven breakthrough viruses was expressed and the antigenicity of the clones with a panel of monoclonal antibodies was examined. As predicted from the sequence data, none of the breakthrough virus envelope glycoproteins reacted with neutralizing MAbs to the V2 domain of MN-rgp120. When MAbs to the C4 domain were examined, only the C17 envelope glycoprotein (that matched MN-rgp120 with respect to K429) showed significant, albeit lower, binding. Surprisingly, the three breakthrough envelope glycoproteins that contained the subtype B PND consensus sequence, IGPGRAF (SEQ. ID. NO. !!), gave poor reactivity with all three PND directed MAbs, even though they possessed PND sequences closely related to the vaccine immunogen. Thus, all three of the vaccinee isolates appeared to possess changes outside of the recognition site that interfered with MAb binding.

[0157] It has been known for many years that resistance to neutralization in vitro can sometimes be attributed to mutations in remote sequences that alter the conformation of neutralizing epitopes and interfere with recognition by virus neutralizing antibodies [Nara et al.; J. Virol. 64:3779-91 (1990); Cordonnier et al.; Nature 340:571-4 (1989)]. Together, these results indicate that the antigenic structure of the envelope glycoproteins recovered from the breakthrough viruses differed significantly from that of the vaccine antigen.

[0158] A novel result was the localization of residues in the C3 domain that appeared to affect the binding of the virus neutralizing human MAb, 15e. This MAb is known to recognize a discontinuous epitope, block CD4 binding, and neutralize a variety of laboratory and primary isolates of HIV-1 [Ho et al.; J. Virol. 65:489-93 (1991); Thali et al.; J. Virol. 66:5635-5641 (1992); Moore et al.; AIDS Res. Hum. Retroviruses 9:1179-1187 (1993)].

[0159] Comparative binding to envelope glycoproteins from the breakthrough viruses indicated that recognition by this antibody is critically dependent on residues in the C3 or C4 domains of gp120. The unique occurrence of a positively charged K at position 351 in the C3 domain provides a common explanation for the inability of the C11.5, C11.7 and C6.1 strains of HIV-1 to bind to 15e. Alternatively, it is possible that different amino acid substitutions in different locations account for the failure of 15e to bind to rgp120s from the C6 and C11 clones. The only obvious positions where substitutions of this type occur are in the C4 domain where T replaces M at 434 (C11) and T replaces I at 439.

[0160] The present studies demonstrate that the current formulation of MN-rgp120 is less than 100% effective against HIV-1 infection. Based on previous in vitro and in vivo studies with MN-rgp120, protection from natural HIV-1 infection in humans is expected to depend on a threshold concentration of virus-neutralizing antibodies, and antigenic similarity between the vaccine immunogen and the challenge virus.

[0161] In this regard, only one of the seven breakthrough infections (C17) was unexpected. This individual received a full course of immunizations yet became infected with a virus similar to MN-rgp120 at at least two important neutralizing epitopes (V3 and C4 domains). This infection might be related to the magnitude of the antibody response at the time of infection, or antigenic differences between the breakthrough virus and the vaccine strain, or circumstances of infection (e.g., ulcerative lesions, infection by donor with acute infection or high viremia), not monitored in this protocol. Alternatively this individual may represent a true vaccine failure, without clear explanation.

[0162] On balance, the analysis of breakthrough infections described herein did not uncover any data that would discourage the continued development of MN-rgp120 as a vaccine to prevent HIV-1 infection. The results support speculation that enhancing vaccine immunogenicity (as by additional booster immunizations) may be required to maintain long term protective immunity, and that the addition of rgp120 from other antigenically different strains of virus in addition to MN-rgp120 are useful to expand the breadth of protection.

[0163] The availability of viruses and viral glycoproteins derived from breakthrough infections may provide an important means to streamline the process of identifying new antigens for inclusion into a multivalent vaccine. Recombinant viral glycoproteins prepared from breakthrough viruses, by definition, possess antigenic structures that are significantly different from MN-rgp120, and are be representative of viruses currently being transmitted. Thus, combining rgp120 from breakthrough viruses with MN-rgp120 is an effective way complement and significantly expand antigenic complexity and increase breadth of cross neutralizing activity.

1 57 1 1503 DNA HIV CDS (1)...(1503) 1 ggg gta cct gtg tgg aag gaa gca acc acc act cta ttt tgt gca tca 48 Gly Val Pro Val Trp Lys Glu Ala Thr Thr Thr Leu Phe Cys Ala Ser 1 5 10 15 gat gct aaa gca tat gac aca gag gtg cat aat gtt tgg gcc aca cat 96 Asp Ala Lys Ala Tyr Asp Thr Glu Val His Asn Val Trp Ala Thr His 20 25 30 gct tgt gta ccc aca gac cca aac cca caa gaa atg gta ttg gaa aat 144 Ala Cys Val Pro Thr Asp Pro Asn Pro Gln Glu Met Val Leu Glu Asn 35 40 45 gtg aca gaa gat ttt aac atg tgg aaa aat gac atg gta gaa cag atg 192 Val Thr Glu Asp Phe Asn Met Trp Lys Asn Asp Met Val Glu Gln Met 50 55 60 cat gag gat ata atc agt tta tgg gat caa agc cta aaa cca tgt gta 240 His Glu Asp Ile Ile Ser Leu Trp Asp Gln Ser Leu Lys Pro Cys Val 65 70 75 80 aaa tta acc cca ctc tgt att act tta aat tgc acc aat tgg aag aag 288 Lys Leu Thr Pro Leu Cys Ile Thr Leu Asn Cys Thr Asn Trp Lys Lys 85 90 95 aat gat act aaa act aat agt agt agt act aca act aat aat agt agt 336 Asn Asp Thr Lys Thr Asn Ser Ser Ser Thr Thr Thr Asn Asn Ser Ser 100 105 110 gct aca gct aat agt agt agt act aca act aat agt agt tgg gga gag 384 Ala Thr Ala Asn Ser Ser Ser Thr Thr Thr Asn Ser Ser Trp Gly Glu 115 120 125 ata aag gag gga gaa ata aag aac tgc tct ttc aat atc acc aca agc 432 Ile Lys Glu Gly Glu Ile Lys Asn Cys Ser Phe Asn Ile Thr Thr Ser 130 135 140 ata aga gac aag gtg aag aaa gaa tat gca ctt ttt tat agc ctt gat 480 Ile Arg Asp Lys Val Lys Lys Glu Tyr Ala Leu Phe Tyr Ser Leu Asp 145 150 155 160 gta gta cca ata gaa aat gat aat act agc tat agg ttg aga agt tgt 528 Val Val Pro Ile Glu Asn Asp Asn Thr Ser Tyr Arg Leu Arg Ser Cys 165 170 175 aac acc tca gtc att aca caa gcc tgt cca aag gta act ttt gag cca 576 Asn Thr Ser Val Ile Thr Gln Ala Cys Pro Lys Val Thr Phe Glu Pro 180 185 190 att ccc ata cat tat tgt acc ccg gct ggt ttt gcg att ctg aag tgt 624 Ile Pro Ile His Tyr Cys Thr Pro Ala Gly Phe Ala Ile Leu Lys Cys 195 200 205 aga gat aaa aag ttc aat gga aca gga cca tgc aaa aat gtt agc aca 672 Arg Asp Lys Lys Phe Asn Gly Thr Gly Pro Cys Lys Asn Val Ser Thr 210 215 220 gta caa tgt gca cat gga att aag cca gta gtg tca act caa ctg ctg 720 Val Gln Cys Ala His Gly Ile Lys Pro Val Val Ser Thr Gln Leu Leu 225 230 235 240 tta aat ggc agc cta gca gaa gaa gag gta ata att aga tct gcc aat 768 Leu Asn Gly Ser Leu Ala Glu Glu Glu Val Ile Ile Arg Ser Ala Asn 245 250 255 ttc tca aac aat gct aaa atc ata ata gta cag ttg agg gaa cct gta 816 Phe Ser Asn Asn Ala Lys Ile Ile Ile Val Gln Leu Arg Glu Pro Val 260 265 270 gaa att aat tgt aca aga ccc agc aac aat aca ata aaa ggt ata cac 864 Glu Ile Asn Cys Thr Arg Pro Ser Asn Asn Thr Ile Lys Gly Ile His 275 280 285 ata gga cca ggg aga gca ttt tat gca aca gga gac ata cga gga gat 912 Ile Gly Pro Gly Arg Ala Phe Tyr Ala Thr Gly Asp Ile Arg Gly Asp 290 295 300 ata aga caa gca cat tgt aac att agt gga gca aaa tgg aat aac act 960 Ile Arg Gln Ala His Cys Asn Ile Ser Gly Ala Lys Trp Asn Asn Thr 305 310 315 320 tta aag aag gta gtt aaa aaa tta aaa gaa caa ttt cca aat aaa aca 1008 Leu Lys Lys Val Val Lys Lys Leu Lys Glu Gln Phe Pro Asn Lys Thr 325 330 335 ata gtc ttt aac cat tcc tca gga ggg gac cca gaa att gta atg cac 1056 Ile Val Phe Asn His Ser Ser Gly Gly Asp Pro Glu Ile Val Met His 340 345 350 agt ttt aat tgt caa ggg gaa ttt ttc tac tgt aat aca aca aag ctg 1104 Ser Phe Asn Cys Gln Gly Glu Phe Phe Tyr Cys Asn Thr Thr Lys Leu 355 360 365 ttt aat agt act tgg aat gat act aca gag tca aat aac aat gat agt 1152 Phe Asn Ser Thr Trp Asn Asp Thr Thr Glu Ser Asn Asn Asn Asp Ser 370 375 380 act att aca ctc cca tgc aga ata aaa caa att ata aac atg tgg cag 1200 Thr Ile Thr Leu Pro Cys Arg Ile Lys Gln Ile Ile Asn Met Trp Gln 385 390 395 400 gaa ata gga aaa gca atg tat gcc cct ccc acc aga gga gaa att aaa 1248 Glu Ile Gly Lys Ala Met Tyr Ala Pro Pro Thr Arg Gly Glu Ile Lys 405 410 415 tgt tca tca aat att aca gga cta ctg tta ata aga gat ggt ggt att 1296 Cys Ser Ser Asn Ile Thr Gly Leu Leu Leu Ile Arg Asp Gly Gly Ile 420 425 430 aac act agc gat gcc acc gag acc ttc aga ccg gga gga gga gat atg 1344 Asn Thr Ser Asp Ala Thr Glu Thr Phe Arg Pro Gly Gly Gly Asp Met 435 440 445 agg gac aat tgg aga agt gaa tta tat aaa tat aaa gta gtg aaa att 1392 Arg Asp Asn Trp Arg Ser Glu Leu Tyr Lys Tyr Lys Val Val Lys Ile 450 455 460 gag cca tta gga gta gca ccc acc aag gca aag aga aga gtg gtg cag 1440 Glu Pro Leu Gly Val Ala Pro Thr Lys Ala Lys Arg Arg Val Val Gln 465 470 475 480 aga gaa aaa aga gca gta aca cta gga gct atg ttc ctt ggg ttc tta 1488 Arg Glu Lys Arg Ala Val Thr Leu Gly Ala Met Phe Leu Gly Phe Leu 485 490 495 gga gca taa agc ttc 1503 Gly Ala Ser Phe 500 2 498 PRT HIV 2 Gly Val Pro Val Trp Lys Glu Ala Thr Thr Thr Leu Phe Cys Ala Ser 1 5 10 15 Asp Ala Lys Ala Tyr Asp Thr Glu Val His Asn Val Trp Ala Thr His 20 25 30 Ala Cys Val Pro Thr Asp Pro Asn Pro Gln Glu Met Val Leu Glu Asn 35 40 45 Val Thr Glu Asp Phe Asn Met Trp Lys Asn Asp Met Val Glu Gln Met 50 55 60 His Glu Asp Ile Ile Ser Leu Trp Asp Gln Ser Leu Lys Pro Cys Val 65 70 75 80 Lys Leu Thr Pro Leu Cys Ile Thr Leu Asn Cys Thr Asn Trp Lys Lys 85 90 95 Asn Asp Thr Lys Thr Asn Ser Ser Ser Thr Thr Thr Asn Asn Ser Ser 100 105 110 Ala Thr Ala Asn Ser Ser Ser Thr Thr Thr Asn Ser Ser Trp Gly Glu 115 120 125 Ile Lys Glu Gly Glu Ile Lys Asn Cys Ser Phe Asn Ile Thr Thr Ser 130 135 140 Ile Arg Asp Lys Val Lys Lys Glu Tyr Ala Leu Phe Tyr Ser Leu Asp 145 150 155 160 Val Val Pro Ile Glu Asn Asp Asn Thr Ser Tyr Arg Leu Arg Ser Cys 165 170 175 Asn Thr Ser Val Ile Thr Gln Ala Cys Pro Lys Val Thr Phe Glu Pro 180 185 190 Ile Pro Ile His Tyr Cys Thr Pro Ala Gly Phe Ala Ile Leu Lys Cys 195 200 205 Arg Asp Lys Lys Phe Asn Gly Thr Gly Pro Cys Lys Asn Val Ser Thr 210 215 220 Val Gln Cys Ala His Gly Ile Lys Pro Val Val Ser Thr Gln Leu Leu 225 230 235 240 Leu Asn Gly Ser Leu Ala Glu Glu Glu Val Ile Ile Arg Ser Ala Asn 245 250 255 Phe Ser Asn Asn Ala Lys Ile Ile Ile Val Gln Leu Arg Glu Pro Val 260 265 270 Glu Ile Asn Cys Thr Arg Pro Ser Asn Asn Thr Ile Lys Gly Ile His 275 280 285 Ile Gly Pro Gly Arg Ala Phe Tyr Ala Thr Gly Asp Ile Arg Gly Asp 290 295 300 Ile Arg Gln Ala His Cys Asn Ile Ser Gly Ala Lys Trp Asn Asn Thr 305 310 315 320 Leu Lys Lys Val Val Lys Lys Leu Lys Glu Gln Phe Pro Asn Lys Thr 325 330 335 Ile Val Phe Asn His Ser Ser Gly Gly Asp Pro Glu Ile Val Met His 340 345 350 Ser Phe Asn Cys Gln Gly Glu Phe Phe Tyr Cys Asn Thr Thr Lys Leu 355 360 365 Phe Asn Ser Thr Trp Asn Asp Thr Thr Glu Ser Asn Asn Asn Asp Ser 370 375 380 Thr Ile Thr Leu Pro Cys Arg Ile Lys Gln Ile Ile Asn Met Trp Gln 385 390 395 400 Glu Ile Gly Lys Ala Met Tyr Ala Pro Pro Thr Arg Gly Glu Ile Lys 405 410 415 Cys Ser Ser Asn Ile Thr Gly Leu Leu Leu Ile Arg Asp Gly Gly Ile 420 425 430 Asn Thr Ser Asp Ala Thr Glu Thr Phe Arg Pro Gly Gly Gly Asp Met 435 440 445 Arg Asp Asn Trp Arg Ser Glu Leu Tyr Lys Tyr Lys Val Val Lys Ile 450 455 460 Glu Pro Leu Gly Val Ala Pro Thr Lys Ala Lys Arg Arg Val Val Gln 465 470 475 480 Arg Glu Lys Arg Ala Val Thr Leu Gly Ala Met Phe Leu Gly Phe Leu 485 490 495 Gly Ala 3 2 PRT HIV 3 Ser Phe 1 4 1503 DNA HIV CDS (1)...(1503) misc_feature (1)...(1503) n = A,T,C or G 4 ggg gta cct gta tgg aaa gaa gca acc acc act cta ttt tgt gca tca 48 Gly Val Pro Val Trp Lys Glu Ala Thr Thr Thr Leu Phe Cys Ala Ser 1 5 10 15 gat gct aaa gca tat gac aca gag gtg cat aat gtt tgg gcc aca cat 96 Asp Ala Lys Ala Tyr Asp Thr Glu Val His Asn Val Trp Ala Thr His 20 25 30 gct tgt gta ccc aca gac cca aac cca caa gaa atg gta ttg gaa aat 144 Ala Cys Val Pro Thr Asp Pro Asn Pro Gln Glu Met Val Leu Glu Asn 35 40 45 gtg aca gaa gat ttt aac atg tgg aaa aat gac atg gta gaa cag atg 192 Val Thr Glu Asp Phe Asn Met Trp Lys Asn Asp Met Val Glu Gln Met 50 55 60 cat gag ant ata atc agt tta tgg gat caa agc cta aaa cca tgt gta 240 His Glu Xaa Ile Ile Ser Leu Trp Asp Gln Ser Leu Lys Pro Cys Val 65 70 75 80 aaa tta acc cca ctc tgt att act tta aat tgc acc aat tgg aag gag 288 Lys Leu Thr Pro Leu Cys Ile Thr Leu Asn Cys Thr Asn Trp Lys Glu 85 90 95 aat gat act aaa act aat agt agt agt act aca act aat aat agt agt 336 Asn Asp Thr Lys Thr Asn Ser Ser Ser Thr Thr Thr Asn Asn Ser Ser 100 105 110 gct aca gct aat agt agt agt act aca act aat agt agt tgg gga gag 384 Ala Thr Ala Asn Ser Ser Ser Thr Thr Thr Asn Ser Ser Trp Gly Glu 115 120 125 ata aag gag gga gaa ata aag aac tgc tct ttc aat atc acc aca ggc 432 Ile Lys Glu Gly Glu Ile Lys Asn Cys Ser Phe Asn Ile Thr Thr Gly 130 135 140 ata aga gac aag gtg aag aaa gaa tat gca ctt ttt tat agc ctt gat 480 Ile Arg Asp Lys Val Lys Lys Glu Tyr Ala Leu Phe Tyr Ser Leu Asp 145 150 155 160 gta gta cca ata gaa aat gat aat act agc tat agg ttg aga agt tgt 528 Val Val Pro Ile Glu Asn Asp Asn Thr Ser Tyr Arg Leu Arg Ser Cys 165 170 175 aac acc tca gtc att aca caa gcc tgt cca aag gta act ttt gag cca 576 Asn Thr Ser Val Ile Thr Gln Ala Cys Pro Lys Val Thr Phe Glu Pro 180 185 190 att ccc ata cat tat tgt acc ccg gct ggt ttt gcg att ctg aag tgt 624 Ile Pro Ile His Tyr Cys Thr Pro Ala Gly Phe Ala Ile Leu Lys Cys 195 200 205 aaa gat aaa aag ttc aat gga aca gga cca tgc aaa aat gtt agc aca 672 Lys Asp Lys Lys Phe Asn Gly Thr Gly Pro Cys Lys Asn Val Ser Thr 210 215 220 gta caa tgt aca cat gga att aag cca gta gtg tca act caa ctg ctg 720 Val Gln Cys Thr His Gly Ile Lys Pro Val Val Ser Thr Gln Leu Leu 225 230 235 240 tta aat ggc agc cta gca gaa gaa gag gta ata att aga tct gcc aat 768 Leu Asn Gly Ser Leu Ala Glu Glu Glu Val Ile Ile Arg Ser Ala Asn 245 250 255 ttc tca aac aat gct aaa atc ata ata gta cag ttg aag gaa cct gta 816 Phe Ser Asn Asn Ala Lys Ile Ile Ile Val Gln Leu Lys Glu Pro Val 260 265 270 gaa att aat tgt aca aga ccc agc aac aat aca ata aaa ggt ata cac 864 Glu Ile Asn Cys Thr Arg Pro Ser Asn Asn Thr Ile Lys Gly Ile His 275 280 285 ata gga cca ggg aga gca ttt tat gca aca gga gac ata cga gga gat 912 Ile Gly Pro Gly Arg Ala Phe Tyr Ala Thr Gly Asp Ile Arg Gly Asp 290 295 300 ata aga caa gca cat tgt aac att agt gga gca aaa tgg aat aac act 960 Ile Arg Gln Ala His Cys Asn Ile Ser Gly Ala Lys Trp Asn Asn Thr 305 310 315 320 tta aag aag gta gtt ata aaa tta aaa gaa caa ttt cca aat aaa aca 1008 Leu Lys Lys Val Val Ile Lys Leu Lys Glu Gln Phe Pro Asn Lys Thr 325 330 335 ata gtc ttt aac cat tcc tca gga ggg gac cca gaa att gta atg cac 1056 Ile Val Phe Asn His Ser Ser Gly Gly Asp Pro Glu Ile Val Met His 340 345 350 agt ttt aat tgt caa ggg gaa ttt ttc tac tgt aat aca acg aag ctg 1104 Ser Phe Asn Cys Gln Gly Glu Phe Phe Tyr Cys Asn Thr Thr Lys Leu 355 360 365 ttt aat agt act tgg aat gat act aca gag tca aat aac aat gat agt 1152 Phe Asn Ser Thr Trp Asn Asp Thr Thr Glu Ser Asn Asn Asn Asp Ser 370 375 380 act att aca ctc cca tgc aga ata aaa caa att ata aac atg tgg cag 1200 Thr Ile Thr Leu Pro Cys Arg Ile Lys Gln Ile Ile Asn Met Trp Gln 385 390 395 400 gaa gta gga aaa gca atg tat gcc cct ccc atc aga gga gaa att aaa 1248 Glu Val Gly Lys Ala Met Tyr Ala Pro Pro Ile Arg Gly Glu Ile Lys 405 410 415 tgt tca tca aat att aca gga cta ctg tta aca aga gat ggt ggt att 1296 Cys Ser Ser Asn Ile Thr Gly Leu Leu Leu Thr Arg Asp Gly Gly Ile 420 425 430 aac act agc gat gcc acc gag acc ttc aga ccg gga gga gga gat atg 1344 Asn Thr Ser Asp Ala Thr Glu Thr Phe Arg Pro Gly Gly Gly Asp Met 435 440 445 agg gac aat tgg aga agt gaa tta tat aaa tat aaa gta gtg aaa att 1392 Arg Asp Asn Trp Arg Ser Glu Leu Tyr Lys Tyr Lys Val Val Lys Ile 450 455 460 gag cca tta gga gta gca ccc acc aag gca aag aga aga gtg gtg cag 1440 Glu Pro Leu Gly Val Ala Pro Thr Lys Ala Lys Arg Arg Val Val Gln 465 470 475 480 aga gaa aaa aga gca gta aca cta gga gct atg ttc ctt ggg ttc ttg 1488 Arg Glu Lys Arg Ala Val Thr Leu Gly Ala Met Phe Leu Gly Phe Leu 485 490 495 gga gca taa agc ttc 1503 Gly Ala Ser Phe 500 5 498 PRT HIV VARIANT (1)...(498) Xaa = Any Amino Acid 5 Gly Val Pro Val Trp Lys Glu Ala Thr Thr Thr Leu Phe Cys Ala Ser 1 5 10 15 Asp Ala Lys Ala Tyr Asp Thr Glu Val His Asn Val Trp Ala Thr His 20 25 30 Ala Cys Val Pro Thr Asp Pro Asn Pro Gln Glu Met Val Leu Glu Asn 35 40 45 Val Thr Glu Asp Phe Asn Met Trp Lys Asn Asp Met Val Glu Gln Met 50 55 60 His Glu Xaa Ile Ile Ser Leu Trp Asp Gln Ser Leu Lys Pro Cys Val 65 70 75 80 Lys Leu Thr Pro Leu Cys Ile Thr Leu Asn Cys Thr Asn Trp Lys Glu 85 90 95 Asn Asp Thr Lys Thr Asn Ser Ser Ser Thr Thr Thr Asn Asn Ser Ser 100 105 110 Ala Thr Ala Asn Ser Ser Ser Thr Thr Thr Asn Ser Ser Trp Gly Glu 115 120 125 Ile Lys Glu Gly Glu Ile Lys Asn Cys Ser Phe Asn Ile Thr Thr Gly 130 135 140 Ile Arg Asp Lys Val Lys Lys Glu Tyr Ala Leu Phe Tyr Ser Leu Asp 145 150 155 160 Val Val Pro Ile Glu Asn Asp Asn Thr Ser Tyr Arg Leu Arg Ser Cys 165 170 175 Asn Thr Ser Val Ile Thr Gln Ala Cys Pro Lys Val Thr Phe Glu Pro 180 185 190 Ile Pro Ile His Tyr Cys Thr Pro Ala Gly Phe Ala Ile Leu Lys Cys 195 200 205 Lys Asp Lys Lys Phe Asn Gly Thr Gly Pro Cys Lys Asn Val Ser Thr 210 215 220 Val Gln Cys Thr His Gly Ile Lys Pro Val Val Ser Thr Gln Leu Leu 225 230 235 240 Leu Asn Gly Ser Leu Ala Glu Glu Glu Val Ile Ile Arg Ser Ala Asn 245 250 255 Phe Ser Asn Asn Ala Lys Ile Ile Ile Val Gln Leu Lys Glu Pro Val 260 265 270 Glu Ile Asn Cys Thr Arg Pro Ser Asn Asn Thr Ile Lys Gly Ile His 275 280 285 Ile Gly Pro Gly Arg Ala Phe Tyr Ala Thr Gly Asp Ile Arg Gly Asp 290 295 300 Ile Arg Gln Ala His Cys Asn Ile Ser Gly Ala Lys Trp Asn Asn Thr 305 310 315 320 Leu Lys Lys Val Val Ile Lys Leu Lys Glu Gln Phe Pro Asn Lys Thr 325 330 335 Ile Val Phe Asn His Ser Ser Gly Gly Asp Pro Glu Ile Val Met His 340 345 350 Ser Phe Asn Cys Gln Gly Glu Phe Phe Tyr Cys Asn Thr Thr Lys Leu 355 360 365 Phe Asn Ser Thr Trp Asn Asp Thr Thr Glu Ser Asn Asn Asn Asp Ser 370 375 380 Thr Ile Thr Leu Pro Cys Arg Ile Lys Gln Ile Ile Asn Met Trp Gln 385 390 395 400 Glu Val Gly Lys Ala Met Tyr Ala Pro Pro Ile Arg Gly Glu Ile Lys 405 410 415 Cys Ser Ser Asn Ile Thr Gly Leu Leu Leu Thr Arg Asp Gly Gly Ile 420 425 430 Asn Thr Ser Asp Ala Thr Glu Thr Phe Arg Pro Gly Gly Gly Asp Met 435 440 445 Arg Asp Asn Trp Arg Ser Glu Leu Tyr Lys Tyr Lys Val Val Lys Ile 450 455 460 Glu Pro Leu Gly Val Ala Pro Thr Lys Ala Lys Arg Arg Val Val Gln 465 470 475 480 Arg Glu Lys Arg Ala Val Thr Leu Gly Ala Met Phe Leu Gly Phe Leu 485 490 495 Gly Ala 6 2 PRT HIV 6 Ser Phe 1 7 1461 DNA HIV CDS (2)...(1459) 7 g gta cct gta tgg aaa gaa gca acc acc act cta ttt tgt gca tca gat 49 Val Pro Val Trp Lys Glu Ala Thr Thr Thr Leu Phe Cys Ala Ser Asp 1 5 10 15 gct aaa gca tat gat aca gag gta cat aat gtt tgg gct aca cat gcc 97 Ala Lys Ala Tyr Asp Thr Glu Val His Asn Val Trp Ala Thr His Ala 20 25 30 tgt gta ccc aca gac ccc aac cca caa gaa gta gta ttg gaa aat gta 145 Cys Val Pro Thr Asp Pro Asn Pro Gln Glu Val Val Leu Glu Asn Val 35 40 45 aca gaa aat ttt aac atg tgg aaa aat aac atg gta gaa cag atg cat 193 Thr Glu Asn Phe Asn Met Trp Lys Asn Asn Met Val Glu Gln Met His 50 55 60 gag gat ata atc agt tta tgg gat caa agt cta aag cca tgt gta aaa 241 Glu Asp Ile Ile Ser Leu Trp Asp Gln Ser Leu Lys Pro Cys Val Lys 65 70 75 80 tta acc cca ctc tgt gtt act tta aat tgc act aat ttg gag aat gct 289 Leu Thr Pro Leu Cys Val Thr Leu Asn Cys Thr Asn Leu Glu Asn Ala 85 90 95 aat aat acc gag aat gct aat aat acc aat aat tat acc ttg ggg atg 337 Asn Asn Thr Glu Asn Ala Asn Asn Thr Asn Asn Tyr Thr Leu Gly Met 100 105 110 gag aga ggt gaa ata aaa aac tgc tct ttc aat atc acc aca agc tta 385 Glu Arg Gly Glu Ile Lys Asn Cys Ser Phe Asn Ile Thr Thr Ser Leu 115 120 125 aga gat aag gtg aaa aaa gaa tat gca ttg ttt tat aaa ctt gat gta 433 Arg Asp Lys Val Lys Lys Glu Tyr Ala Leu Phe Tyr Lys Leu Asp Val 130 135 140 gta caa ata gat aat agt acc aac tat agg ctg ata agt tgt aat acc 481 Val Gln Ile Asp Asn Ser Thr Asn Tyr Arg Leu Ile Ser Cys Asn Thr 145 150 155 160 tca gtc att aca cag gcc tgt cca aag gta tcc ttt gag cta att ccc 529 Ser Val Ile Thr Gln Ala Cys Pro Lys Val Ser Phe Glu Leu Ile Pro 165 170 175 ata cat tat tgt gcc ccg gct ggt ttt gcg att cta aag tgt aaa gat 577 Ile His Tyr Cys Ala Pro Ala Gly Phe Ala Ile Leu Lys Cys Lys Asp 180 185 190 aag aag ttc aat gga aca gga cca tgt aaa aat gtc agc aca gta caa 625 Lys Lys Phe Asn Gly Thr Gly Pro Cys Lys Asn Val Ser Thr Val Gln 195 200 205 tgt aca cat gga att aga cca gta gta tca act caa cta ctg tta aat 673 Cys Thr His Gly Ile Arg Pro Val Val Ser Thr Gln Leu Leu Leu Asn 210 215 220 ggc agt cta gca gaa gaa gag ata gta att aga tct gaa aat atc aca 721 Gly Ser Leu Ala Glu Glu Glu Ile Val Ile Arg Ser Glu Asn Ile Thr 225 230 235 240 gac aat gct aaa acc ata ata gtg cag cta aat gaa tct ata gtg att 769 Asp Asn Ala Lys Thr Ile Ile Val Gln Leu Asn Glu Ser Ile Val Ile 245 250 255 aat tgt aca aga ccc aat aac aac aca aga aaa agt ata aat ata gga 817 Asn Cys Thr Arg Pro Asn Asn Asn Thr Arg Lys Ser Ile Asn Ile Gly 260 265 270 cca ggg aga gca ttc tat aca aca gga gac ata ata gga gat ata aga 865 Pro Gly Arg Ala Phe Tyr Thr Thr Gly Asp Ile Ile Gly Asp Ile Arg 275 280 285 caa gca cat tgt aac ctt agt aaa aca caa tgg gaa aaa acg tta aga 913 Gln Ala His Cys Asn Leu Ser Lys Thr Gln Trp Glu Lys Thr Leu Arg 290 295 300 cag ata gct ata aaa tta gaa gaa aaa ttt aag aat aaa aca ata gcc 961 Gln Ile Ala Ile Lys Leu Glu Glu Lys Phe Lys Asn Lys Thr Ile Ala 305 310 315 320 ttt aat aaa tcc tca gga ggg gac cca gaa att gta atg cac agt ttt 1009 Phe Asn Lys Ser Ser Gly Gly Asp Pro Glu Ile Val Met His Ser Phe 325 330 335 aat tgt gga ggg gaa ttt ttc tac tgt aat aca aca aaa ctg ttt aat 1057 Asn Cys Gly Gly Glu Phe Phe Tyr Cys Asn Thr Thr Lys Leu Phe Asn 340 345 350 agt acc tgg aat tta aca caa ccg ttt agt aat acc ggg aat cgt act 1105 Ser Thr Trp Asn Leu Thr Gln Pro Phe Ser Asn Thr Gly Asn Arg Thr 355 360 365 gaa gag tta aat att aca ctc cca tgc aga ata aaa caa atc ata aac 1153 Glu Glu Leu Asn Ile Thr Leu Pro Cys Arg Ile Lys Gln Ile Ile Asn 370 375 380 ttg tgg cag gaa gta ggc aaa gca atg tat gcc cct ccc atc aga gga 1201 Leu Trp Gln Glu Val Gly Lys Ala Met Tyr Ala Pro Pro Ile Arg Gly 385 390 395 400 caa att aga tgt tca tca aat att aca ggg cta cta tta aca aga gat 1249 Gln Ile Arg Cys Ser Ser Asn Ile Thr Gly Leu Leu Leu Thr Arg Asp 405 410 415 ggt gga agt aac acc ggt gac aac agg act gag acc ttt aga cct gga 1297 Gly Gly Ser Asn Thr Gly Asp Asn Arg Thr Glu Thr Phe Arg Pro Gly 420 425 430 gga gga gat atg agg gac aat tgg aga agt gaa tta tat aaa tat aaa 1345 Gly Gly Asp Met Arg Asp Asn Trp Arg Ser Glu Leu Tyr Lys Tyr Lys 435 440 445 gta gta aga att gaa cca tta gga gta gca ccc acc cag gca aag aga 1393 Val Val Arg Ile Glu Pro Leu Gly Val Ala Pro Thr Gln Ala Lys Arg 450 455 460 aga gtg gtg caa aga gaa aaa aga gca gtg ggg ata gga gct atg ttc 1441 Arg Val Val Gln Arg Glu Lys Arg Ala Val Gly Ile Gly Ala Met Phe 465 470 475 480 ctt ggg ttc ttg gga gat aa 1461 Leu Gly Phe Leu Gly Asp 485 8 486 PRT HIV 8 Val Pro Val Trp Lys Glu Ala Thr Thr Thr Leu Phe Cys Ala Ser Asp 1 5 10 15 Ala Lys Ala Tyr Asp Thr Glu Val His Asn Val Trp Ala Thr His Ala 20 25 30 Cys Val Pro Thr Asp Pro Asn Pro Gln Glu Val Val Leu Glu Asn Val 35 40 45 Thr Glu Asn Phe Asn Met Trp Lys Asn Asn Met Val Glu Gln Met His 50 55 60 Glu Asp Ile Ile Ser Leu Trp Asp Gln Ser Leu Lys Pro Cys Val Lys 65 70 75 80 Leu Thr Pro Leu Cys Val Thr Leu Asn Cys Thr Asn Leu Glu Asn Ala 85 90 95 Asn Asn Thr Glu Asn Ala Asn Asn Thr Asn Asn Tyr Thr Leu Gly Met 100 105 110 Glu Arg Gly Glu Ile Lys Asn Cys Ser Phe Asn Ile Thr Thr Ser Leu 115 120 125 Arg Asp Lys Val Lys Lys Glu Tyr Ala Leu Phe Tyr Lys Leu Asp Val 130 135 140 Val Gln Ile Asp Asn Ser Thr Asn Tyr Arg Leu Ile Ser Cys Asn Thr 145 150 155 160 Ser Val Ile Thr Gln Ala Cys Pro Lys Val Ser Phe Glu Leu Ile Pro 165 170 175 Ile His Tyr Cys Ala Pro Ala Gly Phe Ala Ile Leu Lys Cys Lys Asp 180 185 190 Lys Lys Phe Asn Gly Thr Gly Pro Cys Lys Asn Val Ser Thr Val Gln 195 200 205 Cys Thr His Gly Ile Arg Pro Val Val Ser Thr Gln Leu Leu Leu Asn 210 215 220 Gly Ser Leu Ala Glu Glu Glu Ile Val Ile Arg Ser Glu Asn Ile Thr 225 230 235 240 Asp Asn Ala Lys Thr Ile Ile Val Gln Leu Asn Glu Ser Ile Val Ile 245 250 255 Asn Cys Thr Arg Pro Asn Asn Asn Thr Arg Lys Ser Ile Asn Ile Gly 260 265 270 Pro Gly Arg Ala Phe Tyr Thr Thr Gly Asp Ile Ile Gly Asp Ile Arg 275 280 285 Gln Ala His Cys Asn Leu Ser Lys Thr Gln Trp Glu Lys Thr Leu Arg 290 295 300 Gln Ile Ala Ile Lys Leu Glu Glu Lys Phe Lys Asn Lys Thr Ile Ala 305 310 315 320 Phe Asn Lys Ser Ser Gly Gly Asp Pro Glu Ile Val Met His Ser Phe 325 330 335 Asn Cys Gly Gly Glu Phe Phe Tyr Cys Asn Thr Thr Lys Leu Phe Asn 340 345 350 Ser Thr Trp Asn Leu Thr Gln Pro Phe Ser Asn Thr Gly Asn Arg Thr 355 360 365 Glu Glu Leu Asn Ile Thr Leu Pro Cys Arg Ile Lys Gln Ile Ile Asn 370 375 380 Leu Trp Gln Glu Val Gly Lys Ala Met Tyr Ala Pro Pro Ile Arg Gly 385 390 395 400 Gln Ile Arg Cys Ser Ser Asn Ile Thr Gly Leu Leu Leu Thr Arg Asp 405 410 415 Gly Gly Ser Asn Thr Gly Asp Asn Arg Thr Glu Thr Phe Arg Pro Gly 420 425 430 Gly Gly Asp Met Arg Asp Asn Trp Arg Ser Glu Leu Tyr Lys Tyr Lys 435 440 445 Val Val Arg Ile Glu Pro Leu Gly Val Ala Pro Thr Gln Ala Lys Arg 450 455 460 Arg Val Val Gln Arg Glu Lys Arg Ala Val Gly Ile Gly Ala Met Phe 465 470 475 480 Leu Gly Phe Leu Gly Asp 485 9 1474 DNA HIV CDS (2)...(1474) 9 g gta cct gtg tgg aaa gaa gca acc acc act cta ttt tgt gca tca gat 49 Val Pro Val Trp Lys Glu Ala Thr Thr Thr Leu Phe Cys Ala Ser Asp 1 5 10 15 gct aaa gca tat gat aca gag gta cat aat gtt tgg gct aca cat gcc 97 Ala Lys Ala Tyr Asp Thr Glu Val His Asn Val Trp Ala Thr His Ala 20 25 30 tgt gta ccc aca gac ccc aac cca caa gaa gta gta ttg gaa aat gta 145 Cys Val Pro Thr Asp Pro Asn Pro Gln Glu Val Val Leu Glu Asn Val 35 40 45 aca gaa aat ttt aac atg tgg aaa aat aac atg gta gaa cag atg cat 193 Thr Glu Asn Phe Asn Met Trp Lys Asn Asn Met Val Glu Gln Met His 50 55 60 gag gat ata atc agt tta tgg gat caa agt cta aag cca tgt gta aaa 241 Glu Asp Ile Ile Ser Leu Trp Asp Gln Ser Leu Lys Pro Cys Val Lys 65 70 75 80 tta acc cca ctc tgt gtt act tta aat tgc act aat ttg gag aat gct 289 Leu Thr Pro Leu Cys Val Thr Leu Asn Cys Thr Asn Leu Glu Asn Ala 85 90 95 aat aat acc gag aat gct aat aat acc aat aat tat acc ttg ggg atg 337 Asn Asn Thr Glu Asn Ala Asn Asn Thr Asn Asn Tyr Thr Leu Gly Met 100 105 110 gag aga ggt gaa aga aaa aac tgc tct ttc aat atc acc aca agc tta 385 Glu Arg Gly Glu Arg Lys Asn Cys Ser Phe Asn Ile Thr Thr Ser Leu 115 120 125 aga gat aag ggg aaa aaa gaa tat gca ttg ttt tat aaa ctt gat gta 433 Arg Asp Lys Gly Lys Lys Glu Tyr Ala Leu Phe Tyr Lys Leu Asp Val 130 135 140 gta caa ata gat aat agt acc aac tat agg ctg ata agt tgt aat acc 481 Val Gln Ile Asp Asn Ser Thr Asn Tyr Arg Leu Ile Ser Cys Asn Thr 145 150 155 160 tca gtc att aca cag gcc tgt cca aag gta tcc ttt gag cca att ccc 529 Ser Val Ile Thr Gln Ala Cys Pro Lys Val Ser Phe Glu Pro Ile Pro 165 170 175 ata cat tat tgt gcc ccg gct ggt ttt gcg att cta aag tgt aaa gat 577 Ile His Tyr Cys Ala Pro Ala Gly Phe Ala Ile Leu Lys Cys Lys Asp 180 185 190 aag aag ttc aat gga aca gga cca tgt aaa aat gtc agg aca gta caa 625 Lys Lys Phe Asn Gly Thr Gly Pro Cys Lys Asn Val Arg Thr Val Gln 195 200 205 tgt aca cat gga att aga cca gta gta tca act caa cta ctg tta aat 673 Cys Thr His Gly Ile Arg Pro Val Val Ser Thr Gln Leu Leu Leu Asn 210 215 220 ggc agt cta gca gaa gaa gag ata gta att aga tct gaa aat atc aca 721 Gly Ser Leu Ala Glu Glu Glu Ile Val Ile Arg Ser Glu Asn Ile Thr 225 230 235 240 gac aat gct aaa acc ata ata gtg cag cta aat gaa tct ata gtg att 769 Asp Asn Ala Lys Thr Ile Ile Val Gln Leu Asn Glu Ser Ile Val Ile 245 250 255 aat tgt aca aga ccc aat aac aac aca aga aaa agt ata aat ata gga 817 Asn Cys Thr Arg Pro Asn Asn Asn Thr Arg Lys Ser Ile Asn Ile Gly 260 265 270 cca ggg aga gca ttc tat aca aca gga gac ata ata gga gat ata aga 865 Pro Gly Arg Ala Phe Tyr Thr Thr Gly Asp Ile Ile Gly Asp Ile Arg 275 280 285 caa gca cat tgt aac ctt agt aaa aca caa tgg gaa aaa acg tta aga 913 Gln Ala His Cys Asn Leu Ser Lys Thr Gln Trp Glu Lys Thr Leu Arg 290 295 300 cag ata gct ata aaa tta gaa gaa aaa ttt aag aat aaa aca ata gcc 961 Gln Ile Ala Ile Lys Leu Glu Glu Lys Phe Lys Asn Lys Thr Ile Ala 305 310 315 320 ttt aat aaa tcc tca gga ggg gac cca gaa att gta atg cac agt ttt 1009 Phe Asn Lys Ser Ser Gly Gly Asp Pro Glu Ile Val Met His Ser Phe 325 330 335 aat tgt gga ggg gga ttt ttc tac tgt agt acg aga aaa ctg ttt aat 1057 Asn Cys Gly Gly Gly Phe Phe Tyr Cys Ser Thr Arg Lys Leu Phe Asn 340 345 350 agt acc tgg aat tta aca caa ccg ttt agt aat acc ggg gat cgt act 1105 Ser Thr Trp Asn Leu Thr Gln Pro Phe Ser Asn Thr Gly Asp Arg Thr 355 360 365 gaa gag tta aat att aca ctc cca tgc aga ata aaa caa atc ata aac 1153 Glu Glu Leu Asn Ile Thr Leu Pro Cys Arg Ile Lys Gln Ile Ile Asn 370 375 380 ttg tgg cag gaa gta ggc aaa gca atg tat gcc cct ccc atc aga gga 1201 Leu Trp Gln Glu Val Gly Lys Ala Met Tyr Ala Pro Pro Ile Arg Gly 385 390 395 400 caa att aga tgt tca tca aat att aca ggg cta cta tta agg aga gat 1249 Gln Ile Arg Cys Ser Ser Asn Ile Thr Gly Leu Leu Leu Arg Arg Asp 405 410 415 ggt gga agt aac acc agt gac aac cag act gag acc ttt aga cct ggg 1297 Gly Gly Ser Asn Thr Ser Asp Asn Gln Thr Glu Thr Phe Arg Pro Gly 420 425 430 gga gga gat atg agg gac aag tgg aga agt gaa tta tat aaa tat aaa 1345 Gly Gly Asp Met Arg Asp Lys Trp Arg Ser Glu Leu Tyr Lys Tyr Lys 435 440 445 gta gta aga att gaa cca tta gga gta gca ccc acc cag gca aag aga 1393 Val Val Arg Ile Glu Pro Leu Gly Val Ala Pro Thr Gln Ala Lys Arg 450 455 460 aga gtg gtg caa aga gaa aaa aga gca gtg ggg ata gga gct atg ttc 1441 Arg Val Val Gln Arg Glu Lys Arg Ala Val Gly Ile Gly Ala Met Phe 465 470 475 480 ctt agg ttc tta gga gat aaa gct tct aga gtc 1474 Leu Arg Phe Leu Gly Asp Lys Ala Ser Arg Val 485 490 10 491 PRT HIV 10 Val Pro Val Trp Lys Glu Ala Thr Thr Thr Leu Phe Cys Ala Ser Asp 1 5 10 15 Ala Lys Ala Tyr Asp Thr Glu Val His Asn Val Trp Ala Thr His Ala 20 25 30 Cys Val Pro Thr Asp Pro Asn Pro Gln Glu Val Val Leu Glu Asn Val 35 40 45 Thr Glu Asn Phe Asn Met Trp Lys Asn Asn Met Val Glu Gln Met His 50 55 60 Glu Asp Ile Ile Ser Leu Trp Asp Gln Ser Leu Lys Pro Cys Val Lys 65 70 75 80 Leu Thr Pro Leu Cys Val Thr Leu Asn Cys Thr Asn Leu Glu Asn Ala 85 90 95 Asn Asn Thr Glu Asn Ala Asn Asn Thr Asn Asn Tyr Thr Leu Gly Met 100 105 110 Glu Arg Gly Glu Arg Lys Asn Cys Ser Phe Asn Ile Thr Thr Ser Leu 115 120 125 Arg Asp Lys Gly Lys Lys Glu Tyr Ala Leu Phe Tyr Lys Leu Asp Val 130 135 140 Val Gln Ile Asp Asn Ser Thr Asn Tyr Arg Leu Ile Ser Cys Asn Thr 145 150 155 160 Ser Val Ile Thr Gln Ala Cys Pro Lys Val Ser Phe Glu Pro Ile Pro 165 170 175 Ile His Tyr Cys Ala Pro Ala Gly Phe Ala Ile Leu Lys Cys Lys Asp 180 185 190 Lys Lys Phe Asn Gly Thr Gly Pro Cys Lys Asn Val Arg Thr Val Gln 195 200 205 Cys Thr His Gly Ile Arg Pro Val Val Ser Thr Gln Leu Leu Leu Asn 210 215 220 Gly Ser Leu Ala Glu Glu Glu Ile Val Ile Arg Ser Glu Asn Ile Thr 225 230 235 240 Asp Asn Ala Lys Thr Ile Ile Val Gln Leu Asn Glu Ser Ile Val Ile 245 250 255 Asn Cys Thr Arg Pro Asn Asn Asn Thr Arg Lys Ser Ile Asn Ile Gly 260 265 270 Pro Gly Arg Ala Phe Tyr Thr Thr Gly Asp Ile Ile Gly Asp Ile Arg 275 280 285 Gln Ala His Cys Asn Leu Ser Lys Thr Gln Trp Glu Lys Thr Leu Arg 290 295 300 Gln Ile Ala Ile Lys Leu Glu Glu Lys Phe Lys Asn Lys Thr Ile Ala 305 310 315 320 Phe Asn Lys Ser Ser Gly Gly Asp Pro Glu Ile Val Met His Ser Phe 325 330 335 Asn Cys Gly Gly Gly Phe Phe Tyr Cys Ser Thr Arg Lys Leu Phe Asn 340 345 350 Ser Thr Trp Asn Leu Thr Gln Pro Phe Ser Asn Thr Gly Asp Arg Thr 355 360 365 Glu Glu Leu Asn Ile Thr Leu Pro Cys Arg Ile Lys Gln Ile Ile Asn 370 375 380 Leu Trp Gln Glu Val Gly Lys Ala Met Tyr Ala Pro Pro Ile Arg Gly 385 390 395 400 Gln Ile Arg Cys Ser Ser Asn Ile Thr Gly Leu Leu Leu Arg Arg Asp 405 410 415 Gly Gly Ser Asn Thr Ser Asp Asn Gln Thr Glu Thr Phe Arg Pro Gly 420 425 430 Gly Gly Asp Met Arg Asp Lys Trp Arg Ser Glu Leu Tyr Lys Tyr Lys 435 440 445 Val Val Arg Ile Glu Pro Leu Gly Val Ala Pro Thr Gln Ala Lys Arg 450 455 460 Arg Val Val Gln Arg Glu Lys Arg Ala Val Gly Ile Gly Ala Met Phe 465 470 475 480 Leu Arg Phe Leu Gly Asp Lys Ala Ser Arg Val 485 490 11 1512 DNA HIV CDS (1)...(1512) 11 ctc gag gta cct gta tgg aaa gaa gca act acc act cta ttt tgt gca 48 Leu Glu Val Pro Val Trp Lys Glu Ala Thr Thr Thr Leu Phe Cys Ala 1 5 10 15 tca gat gct aaa gca tat aat aca gag aaa cat aat gtt tgg gcc aca 96 Ser Asp Ala Lys Ala Tyr Asn Thr Glu Lys His Asn Val Trp Ala Thr 20 25 30 cac gcc tgt gta ccc aca gat ccc aac cca caa gaa gta gta ttg gga 144 His Ala Cys Val Pro Thr Asp Pro Asn Pro Gln Glu Val Val Leu Gly 35 40 45 aat gtg aca gaa aat ttt aac atg tgg aaa aat aac atg gta gaa caa 192 Asn Val Thr Glu Asn Phe Asn Met Trp Lys Asn Asn Met Val Glu Gln 50 55 60 atg cat gaa gat ata atc agt tta tgg gat caa agt cta aag cca tgt 240 Met His Glu Asp Ile Ile Ser Leu Trp Asp Gln Ser Leu Lys Pro Cys 65 70 75 80 gta aaa tta acc cca ctc tgt gtt act tta aat tgc act gat gat tta 288 Val Lys Leu Thr Pro Leu Cys Val Thr Leu Asn Cys Thr Asp Asp Leu 85 90 95 ggg aat gct act aat acc aat agt agt gcc act acc aat agt agt agt 336 Gly Asn Ala Thr Asn Thr Asn Ser Ser Ala Thr Thr Asn Ser Ser Ser 100 105 110 tgg gaa gaa atg aag ggg gaa atg aaa aga tgc tct ttc aat atc acc 384 Trp Glu Glu Met Lys Gly Glu Met Lys Arg Cys Ser Phe Asn Ile Thr 115 120 125 aca agc ata aga gat aag att aag aaa gaa cat gca ctt ttc tat aga 432 Thr Ser Ile Arg Asp Lys Ile Lys Lys Glu His Ala Leu Phe Tyr Arg 130 135 140 ctt gat gta gta cca ata gat aat gat aat acc aca tat agg ttg ata 480 Leu Asp Val Val Pro Ile Asp Asn Asp Asn Thr Thr Tyr Arg Leu Ile 145 150 155 160 aat tgt aat acc tca gtc att aca cag gcc tgt cca aag gta tca ttt 528 Asn Cys Asn Thr Ser Val Ile Thr Gln Ala Cys Pro Lys Val Ser Phe 165 170 175 gag cca att ccc ata cat ttt tgt gcc ccg gct ggt ttt gcg att cta 576 Glu Pro Ile Pro Ile His Phe Cys Ala Pro Ala Gly Phe Ala Ile Leu 180 185 190 aag tgt aat aat aag acg ttc gag gga aaa gga cca tgt aaa aat gtc 624 Lys Cys Asn Asn Lys Thr Phe Glu Gly Lys Gly Pro Cys Lys Asn Val 195 200 205 agt aca gta caa tgc aca cat gga att agg cca gta gtg tca act caa 672 Ser Thr Val Gln Cys Thr His Gly Ile Arg Pro Val Val Ser Thr Gln 210 215 220 ctg ctg tta aat ggc agt cta gca gaa gaa gag gta ata att aga tct 720 Leu Leu Leu Asn Gly Ser Leu Ala Glu Glu Glu Val Ile Ile Arg Ser 225 230 235 240 gac aat atc aca gac aat act aaa acc att ata gta cag cta aac gaa 768 Asp Asn Ile Thr Asp Asn Thr Lys Thr Ile Ile Val Gln Leu Asn Glu 245 250 255 tct gta gta att aat tgt aca aga ccc aac aac aat aca aga aaa agt 816 Ser Val Val Ile Asn Cys Thr Arg Pro Asn Asn Asn Thr Arg Lys Ser 260 265 270 ata cat ata gga cca ggg agt gca ttt ttt gca aca gga gaa ata ata 864 Ile His Ile Gly Pro Gly Ser Ala Phe Phe Ala Thr Gly Glu Ile Ile 275 280 285 gga gat ata aga caa gca cac tgt aac ctt agt aga aca caa tgg aat 912 Gly Asp Ile Arg Gln Ala His Cys Asn Leu Ser Arg Thr Gln Trp Asn 290 295 300 aac act tta gga aag ata gtc ata aaa tta aga gaa caa ttt aga aaa 960 Asn Thr Leu Gly Lys Ile Val Ile Lys Leu Arg Glu Gln Phe Arg Lys 305 310 315 320 caa ttt gga gaa aaa aca ata gtc ttt aat cga tcc tca gga ggg gac 1008 Gln Phe Gly Glu Lys Thr Ile Val Phe Asn Arg Ser Ser Gly Gly Asp 325 330 335 ccg gaa att gca atg cac agt ttt aat tgt gga ggg gaa ttt ttc tac 1056 Pro Glu Ile Ala Met His Ser Phe Asn Cys Gly Gly Glu Phe Phe Tyr 340 345 350 tgt aac aca aca gca ctg ttt aat agt acc tgg aat gtt act aaa ggg 1104 Cys Asn Thr Thr Ala Leu Phe Asn Ser Thr Trp Asn Val Thr Lys Gly 355 360 365 ttg aat aac act gaa gga aat agc aca gga gat gaa aat atc ata ctc 1152 Leu Asn Asn Thr Glu Gly Asn Ser Thr Gly Asp Glu Asn Ile Ile Leu 370 375 380 cca tgt aga ata aaa caa att ata aac atg tgg cag gaa gta gga aaa 1200 Pro Cys Arg Ile Lys Gln Ile Ile Asn Met Trp Gln Glu Val Gly Lys 385 390 395 400 gca atg tat gcc cct ccc atc agt gga caa att aga tgt tca tca aac 1248 Ala Met Tyr Ala Pro Pro Ile Ser Gly Gln Ile Arg Cys Ser Ser Asn 405 410 415 att aca ggg ctg cta cta aca aga gat ggt ggt agt aag aac gag agc 1296 Ile Thr Gly Leu Leu Leu Thr Arg Asp Gly Gly Ser Lys Asn Glu Ser 420 425 430 atc acc acc gag gtc ttc aga cct gga gga gga gat atg agg gac aat 1344 Ile Thr Thr Glu Val Phe Arg Pro Gly Gly Gly Asp Met Arg Asp Asn 435 440 445 tgg aga agt gaa tta tat aaa tat aaa gta gta aaa att gaa cca tta 1392 Trp Arg Ser Glu Leu Tyr Lys Tyr Lys Val Val Lys Ile Glu Pro Leu 450 455 460 gga gta gcg ccc acc aag gca aag aga aga gtg gtg cag aga gaa aaa 1440 Gly Val Ala Pro Thr Lys Ala Lys Arg Arg Val Val Gln Arg Glu Lys 465 470 475 480 aga gca gtg gga aca ata gga gct atg ttc ctt ggg ttc ttg gga gca 1488 Arg Ala Val Gly Thr Ile Gly Ala Met Phe Leu Gly Phe Leu Gly Ala 485 490 495 taa agc ttc tag agt cga cct gca 1512 Ser Phe Ser Arg Pro Ala 500 12 496 PRT HIV 12 Leu Glu Val Pro Val Trp Lys Glu Ala Thr Thr Thr Leu Phe Cys Ala 1 5 10 15 Ser Asp Ala Lys Ala Tyr Asn Thr Glu Lys His Asn Val Trp Ala Thr 20 25 30 His Ala Cys Val Pro Thr Asp Pro Asn Pro Gln Glu Val Val Leu Gly 35 40 45 Asn Val Thr Glu Asn Phe Asn Met Trp Lys Asn Asn Met Val Glu Gln 50 55 60 Met His Glu Asp Ile Ile Ser Leu Trp Asp Gln Ser Leu Lys Pro Cys 65 70 75 80 Val Lys Leu Thr Pro Leu Cys Val Thr Leu Asn Cys Thr Asp Asp Leu 85 90 95 Gly Asn Ala Thr Asn Thr Asn Ser Ser Ala Thr Thr Asn Ser Ser Ser 100 105 110 Trp Glu Glu Met Lys Gly Glu Met Lys Arg Cys Ser Phe Asn Ile Thr 115 120 125 Thr Ser Ile Arg Asp Lys Ile Lys Lys Glu His Ala Leu Phe Tyr Arg 130 135 140 Leu Asp Val Val Pro Ile Asp Asn Asp Asn Thr Thr Tyr Arg Leu Ile 145 150 155 160 Asn Cys Asn Thr Ser Val Ile Thr Gln Ala Cys Pro Lys Val Ser Phe 165 170 175 Glu Pro Ile Pro Ile His Phe Cys Ala Pro Ala Gly Phe Ala Ile Leu 180 185 190 Lys Cys Asn Asn Lys Thr Phe Glu Gly Lys Gly Pro Cys Lys Asn Val 195 200 205 Ser Thr Val Gln Cys Thr His Gly Ile Arg Pro Val Val Ser Thr Gln 210 215 220 Leu Leu Leu Asn Gly Ser Leu Ala Glu Glu Glu Val Ile Ile Arg Ser 225 230 235 240 Asp Asn Ile Thr Asp Asn Thr Lys Thr Ile Ile Val Gln Leu Asn Glu 245 250 255 Ser Val Val Ile Asn Cys Thr Arg Pro Asn Asn Asn Thr Arg Lys Ser 260 265 270 Ile His Ile Gly Pro Gly Ser Ala Phe Phe Ala Thr Gly Glu Ile Ile 275 280 285 Gly Asp Ile Arg Gln Ala His Cys Asn Leu Ser Arg Thr Gln Trp Asn 290 295 300 Asn Thr Leu Gly Lys Ile Val Ile Lys Leu Arg Glu Gln Phe Arg Lys 305 310 315 320 Gln Phe Gly Glu Lys Thr Ile Val Phe Asn Arg Ser Ser Gly Gly Asp 325 330 335 Pro Glu Ile Ala Met His Ser Phe Asn Cys Gly Gly Glu Phe Phe Tyr 340 345 350 Cys Asn Thr Thr Ala Leu Phe Asn Ser Thr Trp Asn Val Thr Lys Gly 355 360 365 Leu Asn Asn Thr Glu Gly Asn Ser Thr Gly Asp Glu Asn Ile Ile Leu 370 375 380 Pro Cys Arg Ile Lys Gln Ile Ile Asn Met Trp Gln Glu Val Gly Lys 385 390 395 400 Ala Met Tyr Ala Pro Pro Ile Ser Gly Gln Ile Arg Cys Ser Ser Asn 405 410 415 Ile Thr Gly Leu Leu Leu Thr Arg Asp Gly Gly Ser Lys Asn Glu Ser 420 425 430 Ile Thr Thr Glu Val Phe Arg Pro Gly Gly Gly Asp Met Arg Asp Asn 435 440 445 Trp Arg Ser Glu Leu Tyr Lys Tyr Lys Val Val Lys Ile Glu Pro Leu 450 455 460 Gly Val Ala Pro Thr Lys Ala Lys Arg Arg Val Val Gln Arg Glu Lys 465 470 475 480 Arg Ala Val Gly Thr Ile Gly Ala Met Phe Leu Gly Phe Leu Gly Ala 485 490 495 13 2 PRT HIV 13 Ser Phe 1 14 4 PRT HIV 14 Ser Arg Pro Ala 1 15 1501 DNA HIV CDS (1)...(1500) 15 ctc gag gta cct gtg tgg aaa gaa gca act acc act cta ttt tgt gca 48 Leu Glu Val Pro Val Trp Lys Glu Ala Thr Thr Thr Leu Phe Cys Ala 1 5 10 15 tca gat gct aaa gca tat aat aca gag aaa cat aat gtt tgg gcc aca 96 Ser Asp Ala Lys Ala Tyr Asn Thr Glu Lys His Asn Val Trp Ala Thr 20 25 30 cac gcc tgt gta ccc aca gat ccc aac cca caa gaa gta gta ttg gga 144 His Ala Cys Val Pro Thr Asp Pro Asn Pro Gln Glu Val Val Leu Gly 35 40 45 aat gtg aca gaa aat ttt aac atg tgg aaa aat aac atg gta gaa caa 192 Asn Val Thr Glu Asn Phe Asn Met Trp Lys Asn Asn Met Val Glu Gln 50 55 60 atg cat gaa gat ata atc agt tta tgg gat caa agt cta aag cca tgt 240 Met His Glu Asp Ile Ile Ser Leu Trp Asp Gln Ser Leu Lys Pro Cys 65 70 75 80 gta aaa tta acc cca ctc tgt gtt act tta aat tgc act gat gat tta 288 Val Lys Leu Thr Pro Leu Cys Val Thr Leu Asn Cys Thr Asp Asp Leu 85 90 95 ggg aat gct act aat acc aat agc agt gcc act acc aat agt agt agt 336 Gly Asn Ala Thr Asn Thr Asn Ser Ser Ala Thr Thr Asn Ser Ser Ser 100 105 110 tgg gaa gaa atg aag ggg gaa atg aaa agg tgc tct ttc aat atc acc 384 Trp Glu Glu Met Lys Gly Glu Met Lys Arg Cys Ser Phe Asn Ile Thr 115 120 125 aca agc ata aga gat aag att aag aaa gaa cat gca ctt ttc tat aga 432 Thr Ser Ile Arg Asp Lys Ile Lys Lys Glu His Ala Leu Phe Tyr Arg 130 135 140 ctt gat gta gta cca ata gat aat gat aat acc aca tat agg ttg ata 480 Leu Asp Val Val Pro Ile Asp Asn Asp Asn Thr Thr Tyr Arg Leu Ile 145 150 155 160 aat tgt aat acc tca gtc att aca cag gcc tgt cca aag gta tca ttt 528 Asn Cys Asn Thr Ser Val Ile Thr Gln Ala Cys Pro Lys Val Ser Phe 165 170 175 gag cca att ccc ata cat ttt tgt gcc ccg gct ggt ttt gcg att cta 576 Glu Pro Ile Pro Ile His Phe Cys Ala Pro Ala Gly Phe Ala Ile Leu 180 185 190 aag tgt aat aat aag acg ttc gag gga aaa gga cca tgt aaa aat gtc 624 Lys Cys Asn Asn Lys Thr Phe Glu Gly Lys Gly Pro Cys Lys Asn Val 195 200 205 agt aca gta caa tgc aca cat gga att agg cca gta gtg tca act caa 672 Ser Thr Val Gln Cys Thr His Gly Ile Arg Pro Val Val Ser Thr Gln 210 215 220 ctg ctg tta aat ggc agt cta gca gaa gaa gag gta ata att aga tct 720 Leu Leu Leu Asn Gly Ser Leu Ala Glu Glu Glu Val Ile Ile Arg Ser 225 230 235 240 ggc aat atc aca gac aat act aaa acc att ata gta cag cta aac gaa 768 Gly Asn Ile Thr Asp Asn Thr Lys Thr Ile Ile Val Gln Leu Asn Glu 245 250 255 tct gta gta att aat tgt aca aga tcc aac aac aat aca aga aaa agt 816 Ser Val Val Ile Asn Cys Thr Arg Ser Asn Asn Asn Thr Arg Lys Ser 260 265 270 ata cat ata gga cca ggg agt gca ttt ttt gca aca gga gaa ata ata 864 Ile His Ile Gly Pro Gly Ser Ala Phe Phe Ala Thr Gly Glu Ile Ile 275 280 285 gga gat ata aga caa gca cac tgt aac ctt agt aga aca caa tgg aat 912 Gly Asp Ile Arg Gln Ala His Cys Asn Leu Ser Arg Thr Gln Trp Asn 290 295 300 aac act tta gga aag ata gtc ata aaa tta aga gaa caa ttt aga aaa 960 Asn Thr Leu Gly Lys Ile Val Ile Lys Leu Arg Glu Gln Phe Arg Lys 305 310 315 320 caa ttt gga gaa aaa aca ata gtc ttt aat cga tcc tca gga ggg gac 1008 Gln Phe Gly Glu Lys Thr Ile Val Phe Asn Arg Ser Ser Gly Gly Asp 325 330 335 ccg gaa att gca atg cac agt ttt aat tgt gga ggg gaa ttt ttc tac 1056 Pro Glu Ile Ala Met His Ser Phe Asn Cys Gly Gly Glu Phe Phe Tyr 340 345 350 tgt aac aca aca gca ctg ttt aat agt acc tgg aat gtt act aaa ggg 1104 Cys Asn Thr Thr Ala Leu Phe Asn Ser Thr Trp Asn Val Thr Lys Gly 355 360 365 ttg aat aac act gaa gga aat agc aca ggg gat gaa aat atc ata ctc 1152 Leu Asn Asn Thr Glu Gly Asn Ser Thr Gly Asp Glu Asn Ile Ile Leu 370 375 380 cca tgt aga ata aaa caa att ata aac atg tgg cag gaa gta gga aaa 1200 Pro Cys Arg Ile Lys Gln Ile Ile Asn Met Trp Gln Glu Val Gly Lys 385 390 395 400 gca atg tat gcc cct ccc atc agt gga caa att aga tgt tca tca aat 1248 Ala Met Tyr Ala Pro Pro Ile Ser Gly Gln Ile Arg Cys Ser Ser Asn 405 410 415 att aca ggg ctg cta cta aca aga gat ggt ggt agt aag aac gag agc 1296 Ile Thr Gly Leu Leu Leu Thr Arg Asp Gly Gly Ser Lys Asn Glu Ser 420 425 430 atc acc acc gag gtc ttc aga cct gga gga gga gat atg agg gac aat 1344 Ile Thr Thr Glu Val Phe Arg Pro Gly Gly Gly Asp Met Arg Asp Asn 435 440 445 tgg aga agt gaa tta tat aaa tat aaa gta gta aaa att gaa cca tta 1392 Trp Arg Ser Glu Leu Tyr Lys Tyr Lys Val Val Lys Ile Glu Pro Leu 450 455 460 gga gta gcg ccc acc aag gca aag aga aga gtg gtg cag aga gaa aaa 1440 Gly Val Ala Pro Thr Lys Ala Lys Arg Arg Val Val Gln Arg Glu Lys 465 470 475 480 aga gca gtg gga aca ata gga gct atg ttc ctt ggg ttc tta gga gca 1488 Arg Ala Val Gly Thr Ile Gly Ala Met Phe Leu Gly Phe Leu Gly Ala 485 490 495 taa agc ttc tag a 1501 * Ser Phe * 16 496 PRT HIV 16 Leu Glu Val Pro Val Trp Lys Glu Ala Thr Thr Thr Leu Phe Cys Ala 1 5 10 15 Ser Asp Ala Lys Ala Tyr Asn Thr Glu Lys His Asn Val Trp Ala Thr 20 25 30 His Ala Cys Val Pro Thr Asp Pro Asn Pro Gln Glu Val Val Leu Gly 35 40 45 Asn Val Thr Glu Asn Phe Asn Met Trp Lys Asn Asn Met Val Glu Gln 50 55 60 Met His Glu Asp Ile Ile Ser Leu Trp Asp Gln Ser Leu Lys Pro Cys 65 70 75 80 Val Lys Leu Thr Pro Leu Cys Val Thr Leu Asn Cys Thr Asp Asp Leu 85 90 95 Gly Asn Ala Thr Asn Thr Asn Ser Ser Ala Thr Thr Asn Ser Ser Ser 100 105 110 Trp Glu Glu Met Lys Gly Glu Met Lys Arg Cys Ser Phe Asn Ile Thr 115 120 125 Thr Ser Ile Arg Asp Lys Ile Lys Lys Glu His Ala Leu Phe Tyr Arg 130 135 140 Leu Asp Val Val Pro Ile Asp Asn Asp Asn Thr Thr Tyr Arg Leu Ile 145 150 155 160 Asn Cys Asn Thr Ser Val Ile Thr Gln Ala Cys Pro Lys Val Ser Phe 165 170 175 Glu Pro Ile Pro Ile His Phe Cys Ala Pro Ala Gly Phe Ala Ile Leu 180 185 190 Lys Cys Asn Asn Lys Thr Phe Glu Gly Lys Gly Pro Cys Lys Asn Val 195 200 205 Ser Thr Val Gln Cys Thr His Gly Ile Arg Pro Val Val Ser Thr Gln 210 215 220 Leu Leu Leu Asn Gly Ser Leu Ala Glu Glu Glu Val Ile Ile Arg Ser 225 230 235 240 Gly Asn Ile Thr Asp Asn Thr Lys Thr Ile Ile Val Gln Leu Asn Glu 245 250 255 Ser Val Val Ile Asn Cys Thr Arg Ser Asn Asn Asn Thr Arg Lys Ser 260 265 270 Ile His Ile Gly Pro Gly Ser Ala Phe Phe Ala Thr Gly Glu Ile Ile 275 280 285 Gly Asp Ile Arg Gln Ala His Cys Asn Leu Ser Arg Thr Gln Trp Asn 290 295 300 Asn Thr Leu Gly Lys Ile Val Ile Lys Leu Arg Glu Gln Phe Arg Lys 305 310 315 320 Gln Phe Gly Glu Lys Thr Ile Val Phe Asn Arg Ser Ser Gly Gly Asp 325 330 335 Pro Glu Ile Ala Met His Ser Phe Asn Cys Gly Gly Glu Phe Phe Tyr 340 345 350 Cys Asn Thr Thr Ala Leu Phe Asn Ser Thr Trp Asn Val Thr Lys Gly 355 360 365 Leu Asn Asn Thr Glu Gly Asn Ser Thr Gly Asp Glu Asn Ile Ile Leu 370 375 380 Pro Cys Arg Ile Lys Gln Ile Ile Asn Met Trp Gln Glu Val Gly Lys 385 390 395 400 Ala Met Tyr Ala Pro Pro Ile Ser Gly Gln Ile Arg Cys Ser Ser Asn 405 410 415 Ile Thr Gly Leu Leu Leu Thr Arg Asp Gly Gly Ser Lys Asn Glu Ser 420 425 430 Ile Thr Thr Glu Val Phe Arg Pro Gly Gly Gly Asp Met Arg Asp Asn 435 440 445 Trp Arg Ser Glu Leu Tyr Lys Tyr Lys Val Val Lys Ile Glu Pro Leu 450 455 460 Gly Val Ala Pro Thr Lys Ala Lys Arg Arg Val Val Gln Arg Glu Lys 465 470 475 480 Arg Ala Val Gly Thr Ile Gly Ala Met Phe Leu Gly Phe Leu Gly Ala 485 490 495 17 2 PRT HIV 17 Ser Phe 1 18 1514 DNA HIV CDS (3)...(1514) 18 gg gaa ttc gga tcc ggg gta cct gtg tgg aag gaa gca acc acc act 47 Glu Phe Gly Ser Gly Val Pro Val Trp Lys Glu Ala Thr Thr Thr 1 5 10 15 cta ttc tgt gca tca gat gct aga gca tat gac aca gag gta cat aat 95 Leu Phe Cys Ala Ser Asp Ala Arg Ala Tyr Asp Thr Glu Val His Asn 20 25 30 gtt tgg gcc aca cat gcc tgt gta ccc aca gac cct agt cca caa gaa 143 Val Trp Ala Thr His Ala Cys Val Pro Thr Asp Pro Ser Pro Gln Glu 35 40 45 gta gtt ttg gaa aat gtg aca gaa aat ttt aac atg tgg aaa aat aac 191 Val Val Leu Glu Asn Val Thr Glu Asn Phe Asn Met Trp Lys Asn Asn 50 55 60 atg gta gaa caa atg cat gag gat ata att agt tta tgg gat caa agc 239 Met Val Glu Gln Met His Glu Asp Ile Ile Ser Leu Trp Asp Gln Ser 65 70 75 tta aag cca tgt gta aaa tta acc cca ctc tgt gtt act tta aat tgc 287 Leu Lys Pro Cys Val Lys Leu Thr Pro Leu Cys Val Thr Leu Asn Cys 80 85 90 95 agt gat tat agg aat gct act gat tat aag aat gct act gat acc act 335 Ser Asp Tyr Arg Asn Ala Thr Asp Tyr Lys Asn Ala Thr Asp Thr Thr 100 105 110 agt agt aac gag gga aag atg gag aga gga gaa ata aaa aac tgc tct 383 Ser Ser Asn Glu Gly Lys Met Glu Arg Gly Glu Ile Lys Asn Cys Ser 115 120 125 ttc aat att acc aca agc ata aaa aat aag atg cag aaa gaa tat gca 431 Phe Asn Ile Thr Thr Ser Ile Lys Asn Lys Met Gln Lys Glu Tyr Ala 130 135 140 ctt ttc tat aaa ctt gat ata gta cca ata gat aat aca agc tat aca 479 Leu Phe Tyr Lys Leu Asp Ile Val Pro Ile Asp Asn Thr Ser Tyr Thr 145 150 155 ttg ata agt tgt aac acc tca gtc att aca cag gcc tgt cca aag gta 527 Leu Ile Ser Cys Asn Thr Ser Val Ile Thr Gln Ala Cys Pro Lys Val 160 165 170 175 tcc ttt gaa cca act ccc ata cat tat tgt gct ccg gct ggt ttt gcg 575 Ser Phe Glu Pro Thr Pro Ile His Tyr Cys Ala Pro Ala Gly Phe Ala 180 185 190 att cta aag tgt aat gat aag aag ttc agt gga aaa gga gaa tgt aaa 623 Ile Leu Lys Cys Asn Asp Lys Lys Phe Ser Gly Lys Gly Glu Cys Lys 195 200 205 aat gtc agc aca gta caa tgt aca cat gga att agg cca gta gta tca 671 Asn Val Ser Thr Val Gln Cys Thr His Gly Ile Arg Pro Val Val Ser 210 215 220 act caa ctg ctg tta aat ggc agt cta gca gaa gaa gag gtg gta att 719 Thr Gln Leu Leu Leu Asn Gly Ser Leu Ala Glu Glu Glu Val Val Ile 225 230 235 aga tct gac aat ttc ata gac aat act aaa acc ata ata gta cag ctg 767 Arg Ser Asp Asn Phe Ile Asp Asn Thr Lys Thr Ile Ile Val Gln Leu 240 245 250 255 aaa gaa tct gta gaa att aat tgt ata aga ccc aac aat aat aca aga 815 Lys Glu Ser Val Glu Ile Asn Cys Ile Arg Pro Asn Asn Asn Thr Arg 260 265 270 aaa ggt ata cat ata gga cca ggg aga gca tgg tat gca aca gga gaa 863 Lys Gly Ile His Ile Gly Pro Gly Arg Ala Trp Tyr Ala Thr Gly Glu 275 280 285 ata gta gga gat ata aga aag gca tat tgt aac att agt aga aca aaa 911 Ile Val Gly Asp Ile Arg Lys Ala Tyr Cys Asn Ile Ser Arg Thr Lys 290 295 300 tgg aat aac act tta ata cag ata gct aac aaa tta aaa gaa aaa tat 959 Trp Asn Asn Thr Leu Ile Gln Ile Ala Asn Lys Leu Lys Glu Lys Tyr 305 310 315 aat aca aca ata agc ttt aat cga tcc tca gga ggg gac cca gaa att 1007 Asn Thr Thr Ile Ser Phe Asn Arg Ser Ser Gly Gly Asp Pro Glu Ile 320 325 330 335 gta acg cat agt ttt aat tgt gga ggg gag ttt ttc tac tgt gat tca 1055 Val Thr His Ser Phe Asn Cys Gly Gly Glu Phe Phe Tyr Cys Asp Ser 340 345 350 aca caa ctg ttt aat agt act tgg aat tta aat ggt act tgg aat ttt 1103 Thr Gln Leu Phe Asn Ser Thr Trp Asn Leu Asn Gly Thr Trp Asn Phe 355 360 365 act gca ggg tca aat gaa act gaa ggc aat atc aca ctc cca tgc aga 1151 Thr Ala Gly Ser Asn Glu Thr Glu Gly Asn Ile Thr Leu Pro Cys Arg 370 375 380 ata aaa caa att ata aac agg tgg cag gaa gta ggg aaa gca atg tat 1199 Ile Lys Gln Ile Ile Asn Arg Trp Gln Glu Val Gly Lys Ala Met Tyr 385 390 395 gcc cct ccc atc agt gga caa ata aaa tgc tca tca aac att aca ggg 1247 Ala Pro Pro Ile Ser Gly Gln Ile Lys Cys Ser Ser Asn Ile Thr Gly 400 405 410 415 atg ata tta aca agg gat ggt ggt aac gag aac aat aat gag agc agt 1295 Met Ile Leu Thr Arg Asp Gly Gly Asn Glu Asn Asn Asn Glu Ser Ser 420 425 430 act act gag acc ttc aga ccg gga gga gga gat atg agg aac aat tgg 1343 Thr Thr Glu Thr Phe Arg Pro Gly Gly Gly Asp Met Arg Asn Asn Trp 435 440 445 aga agt gaa tta tat aaa tat aaa gta gta aaa att gaa cca tta gga 1391 Arg Ser Glu Leu Tyr Lys Tyr Lys Val Val Lys Ile Glu Pro Leu Gly 450 455 460 gta gca ccc acc aag gca aag aga aga gtg gtg cag aga gaa aaa aga 1439 Val Ala Pro Thr Lys Ala Lys Arg Arg Val Val Gln Arg Glu Lys Arg 465 470 475 gca gtg gga gcg cta gga gct atg ttc ctt ggg ttc tta gga gca taa 1487 Ala Val Gly Ala Leu Gly Ala Met Phe Leu Gly Phe Leu Gly Ala * 480 485 490 agc ttc tag acc gac tct aga gga tcc 1514 Ser Phe Thr Asp Ser Arg Gly Ser 495 500 19 494 PRT HIV 19 Glu Phe Gly Ser Gly Val Pro Val Trp Lys Glu Ala Thr Thr Thr Leu 1 5 10 15 Phe Cys Ala Ser Asp Ala Arg Ala Tyr Asp Thr Glu Val His Asn Val 20 25 30 Trp Ala Thr His Ala Cys Val Pro Thr Asp Pro Ser Pro Gln Glu Val 35 40 45 Val Leu Glu Asn Val Thr Glu Asn Phe Asn Met Trp Lys Asn Asn Met 50 55 60 Val Glu Gln Met His Glu Asp Ile Ile Ser Leu Trp Asp Gln Ser Leu 65 70 75 80 Lys Pro Cys Val Lys Leu Thr Pro Leu Cys Val Thr Leu Asn Cys Ser 85 90 95 Asp Tyr Arg Asn Ala Thr Asp Tyr Lys Asn Ala Thr Asp Thr Thr Ser 100 105 110 Ser Asn Glu Gly Lys Met Glu Arg Gly Glu Ile Lys Asn Cys Ser Phe 115 120 125 Asn Ile Thr Thr Ser Ile Lys Asn Lys Met Gln Lys Glu Tyr Ala Leu 130 135 140 Phe Tyr Lys Leu Asp Ile Val Pro Ile Asp Asn Thr Ser Tyr Thr Leu 145 150 155 160 Ile Ser Cys Asn Thr Ser Val Ile Thr Gln Ala Cys Pro Lys Val Ser 165 170 175 Phe Glu Pro Thr Pro Ile His Tyr Cys Ala Pro Ala Gly Phe Ala Ile 180 185 190 Leu Lys Cys Asn Asp Lys Lys Phe Ser Gly Lys Gly Glu Cys Lys Asn 195 200 205 Val Ser Thr Val Gln Cys Thr His Gly Ile Arg Pro Val Val Ser Thr 210 215 220 Gln Leu Leu Leu Asn Gly Ser Leu Ala Glu Glu Glu Val Val Ile Arg 225 230 235 240 Ser Asp Asn Phe Ile Asp Asn Thr Lys Thr Ile Ile Val Gln Leu Lys 245 250 255 Glu Ser Val Glu Ile Asn Cys Ile Arg Pro Asn Asn Asn Thr Arg Lys 260 265 270 Gly Ile His Ile Gly Pro Gly Arg Ala Trp Tyr Ala Thr Gly Glu Ile 275 280 285 Val Gly Asp Ile Arg Lys Ala Tyr Cys Asn Ile Ser Arg Thr Lys Trp 290 295 300 Asn Asn Thr Leu Ile Gln Ile Ala Asn Lys Leu Lys Glu Lys Tyr Asn 305 310 315 320 Thr Thr Ile Ser Phe Asn Arg Ser Ser Gly Gly Asp Pro Glu Ile Val 325 330 335 Thr His Ser Phe Asn Cys Gly Gly Glu Phe Phe Tyr Cys Asp Ser Thr 340 345 350 Gln Leu Phe Asn Ser Thr Trp Asn Leu Asn Gly Thr Trp Asn Phe Thr 355 360 365 Ala Gly Ser Asn Glu Thr Glu Gly Asn Ile Thr Leu Pro Cys Arg Ile 370 375 380 Lys Gln Ile Ile Asn Arg Trp Gln Glu Val Gly Lys Ala Met Tyr Ala 385 390 395 400 Pro Pro Ile Ser Gly Gln Ile Lys Cys Ser Ser Asn Ile Thr Gly Met 405 410 415 Ile Leu Thr Arg Asp Gly Gly Asn Glu Asn Asn Asn Glu Ser Ser Thr 420 425 430 Thr Glu Thr Phe Arg Pro Gly Gly Gly Asp Met Arg Asn Asn Trp Arg 435 440 445 Ser Glu Leu Tyr Lys Tyr Lys Val Val Lys Ile Glu Pro Leu Gly Val 450 455 460 Ala Pro Thr Lys Ala Lys Arg Arg Val Val Gln Arg Glu Lys Arg Ala 465 470 475 480 Val Gly Ala Leu Gly Ala Met Phe Leu Gly Phe Leu Gly Ala 485 490 20 2 PRT HIV 20 Ser Phe 1 21 6 PRT HIV 21 Thr Asp Ser Arg Gly Ser 1 5 22 1408 DNA HIV CDS (2)...(1408) 22 g gta cct gtg tgg aag gaa gca acc acc act cta ttc tgt gca tca gat 49 Val Pro Val Trp Lys Glu Ala Thr Thr Thr Leu Phe Cys Ala Ser Asp 1 5 10 15 gct aga gca tat gac aca gag gta cat aat gtt tgg gcc aca cat gcc 97 Ala Arg Ala Tyr Asp Thr Glu Val His Asn Val Trp Ala Thr His Ala 20 25 30 tgt gta ccc aca gac cct agt cca caa gaa gta ttt ttg gga aat gtg 145 Cys Val Pro Thr Asp Pro Ser Pro Gln Glu Val Phe Leu Gly Asn Val 35 40 45 aca gaa aat ttt aat atg tgg aaa aat aac atg gta gaa caa atg tat 193 Thr Glu Asn Phe Asn Met Trp Lys Asn Asn Met Val Glu Gln Met Tyr 50 55 60 gag gat ata att agt tta tgg gat caa agc tta aag cca tgt gta aaa 241 Glu Asp Ile Ile Ser Leu Trp Asp Gln Ser Leu Lys Pro Cys Val Lys 65 70 75 80 tta acc cca ctc tgt gtt act tta aat tgc agt gat tat agg aat gct 289 Leu Thr Pro Leu Cys Val Thr Leu Asn Cys Ser Asp Tyr Arg Asn Ala 85 90 95 act gat tat aag aat gct act gat acc act agt agt aac gag gga aag 337 Thr Asp Tyr Lys Asn Ala Thr Asp Thr Thr Ser Ser Asn Glu Gly Lys 100 105 110 atg gag aga gga gaa ata aaa aac tgc tct ttc aat atc acc aca agc 385 Met Glu Arg Gly Glu Ile Lys Asn Cys Ser Phe Asn Ile Thr Thr Ser 115 120 125 ata aaa aat aag atg cag aaa gaa tat gca ctt ttc tat aaa ctt aat 433 Ile Lys Asn Lys Met Gln Lys Glu Tyr Ala Leu Phe Tyr Lys Leu Asn 130 135 140 ata gta cca ata gat aat aca agc tat aca ttg ata agt tgt aac acc 481 Ile Val Pro Ile Asp Asn Thr Ser Tyr Thr Leu Ile Ser Cys Asn Thr 145 150 155 160 tca gtc att aca cag gcc tgt cca aag gta tcc ttt gaa cca att ccc 529 Ser Val Ile Thr Gln Ala Cys Pro Lys Val Ser Phe Glu Pro Ile Pro 165 170 175 ata cat tat tgt gct ccg gct ggt ttt gcg att cta aag tgt aat gat 577 Ile His Tyr Cys Ala Pro Ala Gly Phe Ala Ile Leu Lys Cys Asn Asp 180 185 190 aag aag ttc agt gga aaa gga gaa tgt aaa aat gtc agc aca gta caa 625 Lys Lys Phe Ser Gly Lys Gly Glu Cys Lys Asn Val Ser Thr Val Gln 195 200 205 tgt aca cat gga att agg cca gta gta tca act caa ctg ctg tta aat 673 Cys Thr His Gly Ile Arg Pro Val Val Ser Thr Gln Leu Leu Leu Asn 210 215 220 ggc agt cta gca gaa gaa gag gtg gta att aga tct gac aat ttc aca 721 Gly Ser Leu Ala Glu Glu Glu Val Val Ile Arg Ser Asp Asn Phe Thr 225 230 235 240 gac aat act aaa acc ata ata gta cag ctg aaa gaa tct gta gaa att 769 Asp Asn Thr Lys Thr Ile Ile Val Gln Leu Lys Glu Ser Val Glu Ile 245 250 255 aat tgt ata aga ccc aac aat aat aca aga aaa ggt ata cat ata gga 817 Asn Cys Ile Arg Pro Asn Asn Asn Thr Arg Lys Gly Ile His Ile Gly 260 265 270 cca ggg aga gca tgg tat gca aca gga gaa ata gta gga gat ata aga 865 Pro Gly Arg Ala Trp Tyr Ala Thr Gly Glu Ile Val Gly Asp Ile Arg 275 280 285 cag gca tat tgt aac att agt aga aca aaa tgg aat aac act tta ata 913 Gln Ala Tyr Cys Asn Ile Ser Arg Thr Lys Trp Asn Asn Thr Leu Ile 290 295 300 cag ata gct aac aaa tta aaa gaa aaa tat aat aca aca ata agc ttt 961 Gln Ile Ala Asn Lys Leu Lys Glu Lys Tyr Asn Thr Thr Ile Ser Phe 305 310 315 320 aat cga tcc tca gga ggg gac cca gaa att gta acc cat agt ttt aat 1009 Asn Arg Ser Ser Gly Gly Asp Pro Glu Ile Val Thr His Ser Phe Asn 325 330 335 tgt gga ggg gaa ttt ttc tac tgt aat tca aca caa ctg ttt aat agt 1057 Cys Gly Gly Glu Phe Phe Tyr Cys Asn Ser Thr Gln Leu Phe Asn Ser 340 345 350 act tgg aat tta aat ggt act tgg aat ttt act gca ggg tca aat gaa 1105 Thr Trp Asn Leu Asn Gly Thr Trp Asn Phe Thr Ala Gly Ser Asn Glu 355 360 365 act gaa ggc aat atc aca ctc cca tgc aga ata aaa caa att ata aac 1153 Thr Glu Gly Asn Ile Thr Leu Pro Cys Arg Ile Lys Gln Ile Ile Asn 370 375 380 agg tgg cag gaa gta gga aaa gca atg tat gcc cct ccc atc agt gga 1201 Arg Trp Gln Glu Val Gly Lys Ala Met Tyr Ala Pro Pro Ile Ser Gly 385 390 395 400 caa ata aga tgc tca tca aac att aca ggg atg ata tta aca agg gat 1249 Gln Ile Arg Cys Ser Ser Asn Ile Thr Gly Met Ile Leu Thr Arg Asp 405 410 415 ggt ggt aac gag aac aat aat gag agc agt act act gag acc ttc aga 1297 Gly Gly Asn Glu Asn Asn Asn Glu Ser Ser Thr Thr Glu Thr Phe Arg 420 425 430 ccg gga gga gga gat atg agg aac aat tgg aga agt gaa tta tat aaa 1345 Pro Gly Gly Gly Asp Met Arg Asn Asn Trp Arg Ser Glu Leu Tyr Lys 435 440 445 tat aaa gta gta aaa att gag cca tta gga gta gca ccc acc gac tct 1393 Tyr Lys Val Val Lys Ile Glu Pro Leu Gly Val Ala Pro Thr Asp Ser 450 455 460 aga gga tcc tct aga 1408 Arg Gly Ser Ser Arg 465 23 469 PRT HIV 23 Val Pro Val Trp Lys Glu Ala Thr Thr Thr Leu Phe Cys Ala Ser Asp 1 5 10 15 Ala Arg Ala Tyr Asp Thr Glu Val His Asn Val Trp Ala Thr His Ala 20 25 30 Cys Val Pro Thr Asp Pro Ser Pro Gln Glu Val Phe Leu Gly Asn Val 35 40 45 Thr Glu Asn Phe Asn Met Trp Lys Asn Asn Met Val Glu Gln Met Tyr 50 55 60 Glu Asp Ile Ile Ser Leu Trp Asp Gln Ser Leu Lys Pro Cys Val Lys 65 70 75 80 Leu Thr Pro Leu Cys Val Thr Leu Asn Cys Ser Asp Tyr Arg Asn Ala 85 90 95 Thr Asp Tyr Lys Asn Ala Thr Asp Thr Thr Ser Ser Asn Glu Gly Lys 100 105 110 Met Glu Arg Gly Glu Ile Lys Asn Cys Ser Phe Asn Ile Thr Thr Ser 115 120 125 Ile Lys Asn Lys Met Gln Lys Glu Tyr Ala Leu Phe Tyr Lys Leu Asn 130 135 140 Ile Val Pro Ile Asp Asn Thr Ser Tyr Thr Leu Ile Ser Cys Asn Thr 145 150 155 160 Ser Val Ile Thr Gln Ala Cys Pro Lys Val Ser Phe Glu Pro Ile Pro 165 170 175 Ile His Tyr Cys Ala Pro Ala Gly Phe Ala Ile Leu Lys Cys Asn Asp 180 185 190 Lys Lys Phe Ser Gly Lys Gly Glu Cys Lys Asn Val Ser Thr Val Gln 195 200 205 Cys Thr His Gly Ile Arg Pro Val Val Ser Thr Gln Leu Leu Leu Asn 210 215 220 Gly Ser Leu Ala Glu Glu Glu Val Val Ile Arg Ser Asp Asn Phe Thr 225 230 235 240 Asp Asn Thr Lys Thr Ile Ile Val Gln Leu Lys Glu Ser Val Glu Ile 245 250 255 Asn Cys Ile Arg Pro Asn Asn Asn Thr Arg Lys Gly Ile His Ile Gly 260 265 270 Pro Gly Arg Ala Trp Tyr Ala Thr Gly Glu Ile Val Gly Asp Ile Arg 275 280 285 Gln Ala Tyr Cys Asn Ile Ser Arg Thr Lys Trp Asn Asn Thr Leu Ile 290 295 300 Gln Ile Ala Asn Lys Leu Lys Glu Lys Tyr Asn Thr Thr Ile Ser Phe 305 310 315 320 Asn Arg Ser Ser Gly Gly Asp Pro Glu Ile Val Thr His Ser Phe Asn 325 330 335 Cys Gly Gly Glu Phe Phe Tyr Cys Asn Ser Thr Gln Leu Phe Asn Ser 340 345 350 Thr Trp Asn Leu Asn Gly Thr Trp Asn Phe Thr Ala Gly Ser Asn Glu 355 360 365 Thr Glu Gly Asn Ile Thr Leu Pro Cys Arg Ile Lys Gln Ile Ile Asn 370 375 380 Arg Trp Gln Glu Val Gly Lys Ala Met Tyr Ala Pro Pro Ile Ser Gly 385 390 395 400 Gln Ile Arg Cys Ser Ser Asn Ile Thr Gly Met Ile Leu Thr Arg Asp 405 410 415 Gly Gly Asn Glu Asn Asn Asn Glu Ser Ser Thr Thr Glu Thr Phe Arg 420 425 430 Pro Gly Gly Gly Asp Met Arg Asn Asn Trp Arg Ser Glu Leu Tyr Lys 435 440 445 Tyr Lys Val Val Lys Ile Glu Pro Leu Gly Val Ala Pro Thr Asp Ser 450 455 460 Arg Gly Ser Ser Arg 465 24 1499 DNA HIV CDS (1)...(1497) 24 gag gta cct gtg tgg aaa gaa gca acc act act cta ttt tgt gca tca 48 Glu Val Pro Val Trp Lys Glu Ala Thr Thr Thr Leu Phe Cys Ala Ser 1 5 10 15 gat gct aaa gca tat gac aca ggg gtg cat aat gtt tgg gcc aca cat 96 Asp Ala Lys Ala Tyr Asp Thr Gly Val His Asn Val Trp Ala Thr His 20 25 30 gcc tgt gta ccc aca gac ccc aac cca caa gaa ata gaa ttg gta aat 144 Ala Cys Val Pro Thr Asp Pro Asn Pro Gln Glu Ile Glu Leu Val Asn 35 40 45 gtg aca gaa gat ttt aac atg tgg aaa aat aaa atg gta gac cag atg 192 Val Thr Glu Asp Phe Asn Met Trp Lys Asn Lys Met Val Asp Gln Met 50 55 60 cat gag gat ata atc agt tta tgg gat gaa agc cta aag cca tgt gta 240 His Glu Asp Ile Ile Ser Leu Trp Asp Glu Ser Leu Lys Pro Cys Val 65 70 75 80 aag tta acc cca ctt tgt gtt act cta aac tgc agt gat gtg aac aat 288 Lys Leu Thr Pro Leu Cys Val Thr Leu Asn Cys Ser Asp Val Asn Asn 85 90 95 tcc aca aat cct aat gat act aat act aat tcc act aat act act tcc 336 Ser Thr Asn Pro Asn Asp Thr Asn Thr Asn Ser Thr Asn Thr Thr Ser 100 105 110 tct act cct acg gcc act act agt agc gag gaa aag atg gag aag gga 384 Ser Thr Pro Thr Ala Thr Thr Ser Ser Glu Glu Lys Met Glu Lys Gly 115 120 125 gaa ata aaa aac tgc tct ttc aat atc acc aca cac atg aaa gat aag 432 Glu Ile Lys Asn Cys Ser Phe Asn Ile Thr Thr His Met Lys Asp Lys 130 135 140 gca cag aaa gaa tat gca ctt ttt tat aaa ctt gat ata gta cca ata 480 Ala Gln Lys Glu Tyr Ala Leu Phe Tyr Lys Leu Asp Ile Val Pro Ile 145 150 155 160 gat gat aat aat gcc agc tat agg ttg ata agt tgt aat acc tca gac 528 Asp Asp Asn Asn Ala Ser Tyr Arg Leu Ile Ser Cys Asn Thr Ser Asp 165 170 175 att aca cag gcc tgt cca aag gtg acc ttt gag cca att ccc ata cat 576 Ile Thr Gln Ala Cys Pro Lys Val Thr Phe Glu Pro Ile Pro Ile His 180 185 190 tat tgt gcc ccg gct ggt ttt gcg att cta aag tgt aaa gat aag aag 624 Tyr Cys Ala Pro Ala Gly Phe Ala Ile Leu Lys Cys Lys Asp Lys Lys 195 200 205 ttc aat gga aca gga cca tgt tca aag gtc agc aca gta caa tgt aca 672 Phe Asn Gly Thr Gly Pro Cys Ser Lys Val Ser Thr Val Gln Cys Thr 210 215 220 cat gga att agg cca gta gta tca act caa ctg ttg tta aat ggc agt 720 His Gly Ile Arg Pro Val Val Ser Thr Gln Leu Leu Leu Asn Gly Ser 225 230 235 240 ctt gca gaa gaa gaa gta gta att aga tct gtc aat ttc aca gac aat 768 Leu Ala Glu Glu Glu Val Val Ile Arg Ser Val Asn Phe Thr Asp Asn 245 250 255 gct aaa atc ata ata gta cag ctg aaa gaa cct gta gca att aat tgt 816 Ala Lys Ile Ile Ile Val Gln Leu Lys Glu Pro Val Ala Ile Asn Cys 260 265 270 aca aga ccc aac aac aat aca aga aaa ggt ata cat cta gga cca ggg 864 Thr Arg Pro Asn Asn Asn Thr Arg Lys Gly Ile His Leu Gly Pro Gly 275 280 285 agc aca ttt tat aca aca gga gaa ata ata gga gac ata aga aaa gca 912 Ser Thr Phe Tyr Thr Thr Gly Glu Ile Ile Gly Asp Ile Arg Lys Ala 290 295 300 tat tgc aag att agt aaa gaa aaa tgg aat aac act tta aga cag gta 960 Tyr Cys Lys Ile Ser Lys Glu Lys Trp Asn Asn Thr Leu Arg Gln Val 305 310 315 320 gtt aaa aaa tta aga gaa caa ttt ggg aat aaa aca ata att ttt aat 1008 Val Lys Lys Leu Arg Glu Gln Phe Gly Asn Lys Thr Ile Ile Phe Asn 325 330 335 cga tcc tca gga ggg gac cca gaa att gta atg cac agt ttt aac tgt 1056 Arg Ser Ser Gly Gly Asp Pro Glu Ile Val Met His Ser Phe Asn Cys 340 345 350 gga ggg gag ttt ttc tac tgt aat aca aca caa ctg ttt aat agt act 1104 Gly Gly Glu Phe Phe Tyr Cys Asn Thr Thr Gln Leu Phe Asn Ser Thr 355 360 365 tgg aat aat act gaa ggg aca aat agc act gaa gga aat agc aca atc 1152 Trp Asn Asn Thr Glu Gly Thr Asn Ser Thr Glu Gly Asn Ser Thr Ile 370 375 380 aca ctc cca tgc aga ata aaa caa att ata aat atg tgg cag gaa gta 1200 Thr Leu Pro Cys Arg Ile Lys Gln Ile Ile Asn Met Trp Gln Glu Val 385 390 395 400 gga aaa gca acg tat gcc cct ccc atc aga gga cga att aga tgc ata 1248 Gly Lys Ala Thr Tyr Ala Pro Pro Ile Arg Gly Arg Ile Arg Cys Ile 405 410 415 tca aat att aca gga ctg cta tta aca aga gat ggt ggt agg aat gtc 1296 Ser Asn Ile Thr Gly Leu Leu Leu Thr Arg Asp Gly Gly Arg Asn Val 420 425 430 aca aac aat acc gaa acc ttc aga cct gga gga gga gac atg agg gac 1344 Thr Asn Asn Thr Glu Thr Phe Arg Pro Gly Gly Gly Asp Met Arg Asp 435 440 445 aat tgg aga agt gaa tta tat aaa tat aaa gta gta aaa gtt gaa cca 1392 Asn Trp Arg Ser Glu Leu Tyr Lys Tyr Lys Val Val Lys Val Glu Pro 450 455 460 tta gga ata gca ccc acc aag gca aag aga aga gtg gtg cac aga gac 1440 Leu Gly Ile Ala Pro Thr Lys Ala Lys Arg Arg Val Val His Arg Asp 465 470 475 480 aaa aga gca gca cta gga gcc ttg ttc ctt ggg ttc tta gga gca taa 1488 Lys Arg Ala Ala Leu Gly Ala Leu Phe Leu Gly Phe Leu Gly Ala * 485 490 495 aag ctt cta ga 1499 Lys Leu Leu 25 495 PRT HIV 25 Glu Val Pro Val Trp Lys Glu Ala Thr Thr Thr Leu Phe Cys Ala Ser 1 5 10 15 Asp Ala Lys Ala Tyr Asp Thr Gly Val His Asn Val Trp Ala Thr His 20 25 30 Ala Cys Val Pro Thr Asp Pro Asn Pro Gln Glu Ile Glu Leu Val Asn 35 40 45 Val Thr Glu Asp Phe Asn Met Trp Lys Asn Lys Met Val Asp Gln Met 50 55 60 His Glu Asp Ile Ile Ser Leu Trp Asp Glu Ser Leu Lys Pro Cys Val 65 70 75 80 Lys Leu Thr Pro Leu Cys Val Thr Leu Asn Cys Ser Asp Val Asn Asn 85 90 95 Ser Thr Asn Pro Asn Asp Thr Asn Thr Asn Ser Thr Asn Thr Thr Ser 100 105 110 Ser Thr Pro Thr Ala Thr Thr Ser Ser Glu Glu Lys Met Glu Lys Gly 115 120 125 Glu Ile Lys Asn Cys Ser Phe Asn Ile Thr Thr His Met Lys Asp Lys 130 135 140 Ala Gln Lys Glu Tyr Ala Leu Phe Tyr Lys Leu Asp Ile Val Pro Ile 145 150 155 160 Asp Asp Asn Asn Ala Ser Tyr Arg Leu Ile Ser Cys Asn Thr Ser Asp 165 170 175 Ile Thr Gln Ala Cys Pro Lys Val Thr Phe Glu Pro Ile Pro Ile His 180 185 190 Tyr Cys Ala Pro Ala Gly Phe Ala Ile Leu Lys Cys Lys Asp Lys Lys 195 200 205 Phe Asn Gly Thr Gly Pro Cys Ser Lys Val Ser Thr Val Gln Cys Thr 210 215 220 His Gly Ile Arg Pro Val Val Ser Thr Gln Leu Leu Leu Asn Gly Ser 225 230 235 240 Leu Ala Glu Glu Glu Val Val Ile Arg Ser Val Asn Phe Thr Asp Asn 245 250 255 Ala Lys Ile Ile Ile Val Gln Leu Lys Glu Pro Val Ala Ile Asn Cys 260 265 270 Thr Arg Pro Asn Asn Asn Thr Arg Lys Gly Ile His Leu Gly Pro Gly 275 280 285 Ser Thr Phe Tyr Thr Thr Gly Glu Ile Ile Gly Asp Ile Arg Lys Ala 290 295 300 Tyr Cys Lys Ile Ser Lys Glu Lys Trp Asn Asn Thr Leu Arg Gln Val 305 310 315 320 Val Lys Lys Leu Arg Glu Gln Phe Gly Asn Lys Thr Ile Ile Phe Asn 325 330 335 Arg Ser Ser Gly Gly Asp Pro Glu Ile Val Met His Ser Phe Asn Cys 340 345 350 Gly Gly Glu Phe Phe Tyr Cys Asn Thr Thr Gln Leu Phe Asn Ser Thr 355 360 365 Trp Asn Asn Thr Glu Gly Thr Asn Ser Thr Glu Gly Asn Ser Thr Ile 370 375 380 Thr Leu Pro Cys Arg Ile Lys Gln Ile Ile Asn Met Trp Gln Glu Val 385 390 395 400 Gly Lys Ala Thr Tyr Ala Pro Pro Ile Arg Gly Arg Ile Arg Cys Ile 405 410 415 Ser Asn Ile Thr Gly Leu Leu Leu Thr Arg Asp Gly Gly Arg Asn Val 420 425 430 Thr Asn Asn Thr Glu Thr Phe Arg Pro Gly Gly Gly Asp Met Arg Asp 435 440 445 Asn Trp Arg Ser Glu Leu Tyr Lys Tyr Lys Val Val Lys Val Glu Pro 450 455 460 Leu Gly Ile Ala Pro Thr Lys Ala Lys Arg Arg Val Val His Arg Asp 465 470 475 480 Lys Arg Ala Ala Leu Gly Ala Leu Phe Leu Gly Phe Leu Gly Ala 485 490 495 26 3 PRT HIV 26 Lys Leu Leu 1 27 1499 DNA HIV CDS (1)...(1497) misc_feature (1)...(1499) n = A,T,C or G 27 gag gta cct gta tgg aaa gaa gca acc act act cta ttt tgt gca tca 48 Glu Val Pro Val Trp Lys Glu Ala Thr Thr Thr Leu Phe Cys Ala Ser 1 5 10 15 gat gct aaa gca tat gac aca gag gtg cat aat gtt tgg gcc aca cat 96 Asp Ala Lys Ala Tyr Asp Thr Glu Val His Asn Val Trp Ala Thr His 20 25 30 gcc tgt gta ccc aca gac ccc aac cca caa gaa ata gaa ttg gta aat 144 Ala Cys Val Pro Thr Asp Pro Asn Pro Gln Glu Ile Glu Leu Val Asn 35 40 45 gtg aca gaa gat ttt aac atg tgg aaa aat aaa atg gta gac cag atg 192 Val Thr Glu Asp Phe Asn Met Trp Lys Asn Lys Met Val Asp Gln Met 50 55 60 cat gag gat ata atc agt tta tgg gat gaa agc cta aag cca tgt gta 240 His Glu Asp Ile Ile Ser Leu Trp Asp Glu Ser Leu Lys Pro Cys Val 65 70 75 80 aag tta acc cca ctt tgt gtt act cta aac tgc agt gat gtg aac aat 288 Lys Leu Thr Pro Leu Cys Val Thr Leu Asn Cys Ser Asp Val Asn Asn 85 90 95 tcc aca aat cct aat gat act aat act aat tcc act aat act act tcc 336 Ser Thr Asn Pro Asn Asp Thr Asn Thr Asn Ser Thr Asn Thr Thr Ser 100 105 110 tct act cct acg gcc act act agt agc gag gaa aag atg gag aag gga 384 Ser Thr Pro Thr Ala Thr Thr Ser Ser Glu Glu Lys Met Glu Lys Gly 115 120 125 gaa ata aaa aac tgc tct ttc aat atc acc aca cac atg aaa gat aag 432 Glu Ile Lys Asn Cys Ser Phe Asn Ile Thr Thr His Met Lys Asp Lys 130 135 140 gta cag aaa gaa tat gca ctt ttt tat aaa ctt gat ata gta cca ata 480 Val Gln Lys Glu Tyr Ala Leu Phe Tyr Lys Leu Asp Ile Val Pro Ile 145 150 155 160 gat gat aat aat acc agc tat agg ttg ata agt tgt aat acc tca gtc 528 Asp Asp Asn Asn Thr Ser Tyr Arg Leu Ile Ser Cys Asn Thr Ser Val 165 170 175 att aca cag gcc tgt cca atg gtg acc ttt gag cca att ccc ata cat 576 Ile Thr Gln Ala Cys Pro Met Val Thr Phe Glu Pro Ile Pro Ile His 180 185 190 tat tgt gcc ccg gct ggt ttt gcg att cta aag tgt aaa gat aag aag 624 Tyr Cys Ala Pro Ala Gly Phe Ala Ile Leu Lys Cys Lys Asp Lys Lys 195 200 205 ttc aat gga aca gga cca tgt tca aag gtc agc aca gta caa tgt aca 672 Phe Asn Gly Thr Gly Pro Cys Ser Lys Val Ser Thr Val Gln Cys Thr 210 215 220 cat gga att agg cca gta gta tca act caa ctg ttg tta aat ggc agt 720 His Gly Ile Arg Pro Val Val Ser Thr Gln Leu Leu Leu Asn Gly Ser 225 230 235 240 ctt gca gaa gaa gaa gta gta att aga tct gtc aat ttc aca gac aat 768 Leu Ala Glu Glu Glu Val Val Ile Arg Ser Val Asn Phe Thr Asp Asn 245 250 255 gct aaa atc ata ata gta cag ctg aaa gaa cct gta gca att aat tgt 816 Ala Lys Ile Ile Ile Val Gln Leu Lys Glu Pro Val Ala Ile Asn Cys 260 265 270 aca aga ccc aac aac aat aca aga aaa ggt ata cat cta gga cca ggg 864 Thr Arg Pro Asn Asn Asn Thr Arg Lys Gly Ile His Leu Gly Pro Gly 275 280 285 agc aca ttt tat aca aca gga gaa ata ata gga gac ata aga aaa gca 912 Ser Thr Phe Tyr Thr Thr Gly Glu Ile Ile Gly Asp Ile Arg Lys Ala 290 295 300 tat tgc aag att agt aaa gaa aaa tgg aat aac act tta aga cag gta 960 Tyr Cys Lys Ile Ser Lys Glu Lys Trp Asn Asn Thr Leu Arg Gln Val 305 310 315 320 gtt aaa aaa tta aga gaa caa ttt ggg aat aaa aca ata att ttt aat 1008 Val Lys Lys Leu Arg Glu Gln Phe Gly Asn Lys Thr Ile Ile Phe Asn 325 330 335 cga tcc tca gga ggg gac cca gaa att gta atg cac agt ttt aac tgt 1056 Arg Ser Ser Gly Gly Asp Pro Glu Ile Val Met His Ser Phe Asn Cys 340 345 350 gga ggg gag ttt ttc tac tgt aat aca aca caa ctg ttt aat agt act 1104 Gly Gly Glu Phe Phe Tyr Cys Asn Thr Thr Gln Leu Phe Asn Ser Thr 355 360 365 tgg aat aat act gaa ggg aca aat agc act gaa gga aat agc aca atc 1152 Trp Asn Asn Thr Glu Gly Thr Asn Ser Thr Glu Gly Asn Ser Thr Ile 370 375 380 aca ctc cca tgc aga ata aaa caa att ata aat atg tgg cag gaa gta 1200 Thr Leu Pro Cys Arg Ile Lys Gln Ile Ile Asn Met Trp Gln Glu Val 385 390 395 400 gga aaa gca acg tat gcc cct ccc atc aga gga cga att aga tgc ata 1248 Gly Lys Ala Thr Tyr Ala Pro Pro Ile Arg Gly Arg Ile Arg Cys Ile 405 410 415 tca aat att aca gga ctg cta tta aca aga gat ggt ggt agg aat gtc 1296 Ser Asn Ile Thr Gly Leu Leu Leu Thr Arg Asp Gly Gly Arg Asn Val 420 425 430 aca aac aat acc gan ncc ttc aga cct gga gga gga gac atg agg gac 1344 Thr Asn Asn Thr Xaa Xaa Phe Arg Pro Gly Gly Gly Asp Met Arg Asp 435 440 445 aat tgg aga agt gaa tta tat aaa tat aaa gta gta aaa gtt gaa cca 1392 Asn Trp Arg Ser Glu Leu Tyr Lys Tyr Lys Val Val Lys Val Glu Pro 450 455 460 tta gga ata gca ccc acc aag gca aag aga aga gtg gtg cac aga gac 1440 Leu Gly Ile Ala Pro Thr Lys Ala Lys Arg Arg Val Val His Arg Asp 465 470 475 480 aaa aga gca gca cta gga gct ttg ttc ctt ggg ttc tta gga gca taa 1488 Lys Arg Ala Ala Leu Gly Ala Leu Phe Leu Gly Phe Leu Gly Ala * 485 490 495 aag ctt cta ga 1499 Lys Leu Leu 28 495 PRT HIV VARIANT (1)...(495) Xaa = Any Amino Acid 28 Glu Val Pro Val Trp Lys Glu Ala Thr Thr Thr Leu Phe Cys Ala Ser 1 5 10 15 Asp Ala Lys Ala Tyr Asp Thr Glu Val His Asn Val Trp Ala Thr His 20 25 30 Ala Cys Val Pro Thr Asp Pro Asn Pro Gln Glu Ile Glu Leu Val Asn 35 40 45 Val Thr Glu Asp Phe Asn Met Trp Lys Asn Lys Met Val Asp Gln Met 50 55 60 His Glu Asp Ile Ile Ser Leu Trp Asp Glu Ser Leu Lys Pro Cys Val 65 70 75 80 Lys Leu Thr Pro Leu Cys Val Thr Leu Asn Cys Ser Asp Val Asn Asn 85 90 95 Ser Thr Asn Pro Asn Asp Thr Asn Thr Asn Ser Thr Asn Thr Thr Ser 100 105 110 Ser Thr Pro Thr Ala Thr Thr Ser Ser Glu Glu Lys Met Glu Lys Gly 115 120 125 Glu Ile Lys Asn Cys Ser Phe Asn Ile Thr Thr His Met Lys Asp Lys 130 135 140 Val Gln Lys Glu Tyr Ala Leu Phe Tyr Lys Leu Asp Ile Val Pro Ile 145 150 155 160 Asp Asp Asn Asn Thr Ser Tyr Arg Leu Ile Ser Cys Asn Thr Ser Val 165 170 175 Ile Thr Gln Ala Cys Pro Met Val Thr Phe Glu Pro Ile Pro Ile His 180 185 190 Tyr Cys Ala Pro Ala Gly Phe Ala Ile Leu Lys Cys Lys Asp Lys Lys 195 200 205 Phe Asn Gly Thr Gly Pro Cys Ser Lys Val Ser Thr Val Gln Cys Thr 210 215 220 His Gly Ile Arg Pro Val Val Ser Thr Gln Leu Leu Leu Asn Gly Ser 225 230 235 240 Leu Ala Glu Glu Glu Val Val Ile Arg Ser Val Asn Phe Thr Asp Asn 245 250 255 Ala Lys Ile Ile Ile Val Gln Leu Lys Glu Pro Val Ala Ile Asn Cys 260 265 270 Thr Arg Pro Asn Asn Asn Thr Arg Lys Gly Ile His Leu Gly Pro Gly 275 280 285 Ser Thr Phe Tyr Thr Thr Gly Glu Ile Ile Gly Asp Ile Arg Lys Ala 290 295 300 Tyr Cys Lys Ile Ser Lys Glu Lys Trp Asn Asn Thr Leu Arg Gln Val 305 310 315 320 Val Lys Lys Leu Arg Glu Gln Phe Gly Asn Lys Thr Ile Ile Phe Asn 325 330 335 Arg Ser Ser Gly Gly Asp Pro Glu Ile Val Met His Ser Phe Asn Cys 340 345 350 Gly Gly Glu Phe Phe Tyr Cys Asn Thr Thr Gln Leu Phe Asn Ser Thr 355 360 365 Trp Asn Asn Thr Glu Gly Thr Asn Ser Thr Glu Gly Asn Ser Thr Ile 370 375 380 Thr Leu Pro Cys Arg Ile Lys Gln Ile Ile Asn Met Trp Gln Glu Val 385 390 395 400 Gly Lys Ala Thr Tyr Ala Pro Pro Ile Arg Gly Arg Ile Arg Cys Ile 405 410 415 Ser Asn Ile Thr Gly Leu Leu Leu Thr Arg Asp Gly Gly Arg Asn Val 420 425 430 Thr Asn Asn Thr Xaa Xaa Phe Arg Pro Gly Gly Gly Asp Met Arg Asp 435 440 445 Asn Trp Arg Ser Glu Leu Tyr Lys Tyr Lys Val Val Lys Val Glu Pro 450 455 460 Leu Gly Ile Ala Pro Thr Lys Ala Lys Arg Arg Val Val His Arg Asp 465 470 475 480 Lys Arg Ala Ala Leu Gly Ala Leu Phe Leu Gly Phe Leu Gly Ala 485 490 495 29 3 PRT HIV 29 Lys Leu Leu 1 30 1475 DNA HIV CDS (2)...(1450) 30 g gta cct gtg tgg aaa gaa gca aac aca act cta ttt tgt gca tca gat 49 Val Pro Val Trp Lys Glu Ala Asn Thr Thr Leu Phe Cys Ala Ser Asp 1 5 10 15 gct aaa gca tat gat aga gaa gta cat aat gtt tgg gca aca cat gcc 97 Ala Lys Ala Tyr Asp Arg Glu Val His Asn Val Trp Ala Thr His Ala 20 25 30 tgt gta ccc aca gac ccc aac cca caa gaa ata gta ttg gga aat gtg 145 Cys Val Pro Thr Asp Pro Asn Pro Gln Glu Ile Val Leu Gly Asn Val 35 40 45 aca gaa aat ttt aac atg tgg aaa aat aac atg gta gaa caa atg cat 193 Thr Glu Asn Phe Asn Met Trp Lys Asn Asn Met Val Glu Gln Met His 50 55 60 gag gat ata atc aat tta tgg gat caa agc tta aag cca tgt gta aag 241 Glu Asp Ile Ile Asn Leu Trp Asp Gln Ser Leu Lys Pro Cys Val Lys 65 70 75 80 tta act cca ctc tgt gtt act tta aag tgc aag gat ctg gag agg aat 289 Leu Thr Pro Leu Cys Val Thr Leu Lys Cys Lys Asp Leu Glu Arg Asn 85 90 95 act acc tat aat agc act att acc aat aat agt agt ttg gag gga cta 337 Thr Thr Tyr Asn Ser Thr Ile Thr Asn Asn Ser Ser Leu Glu Gly Leu 100 105 110 aga gaa caa atg aca aac tgc tct ttc aac atc acc aca agt ata aga 385 Arg Glu Gln Met Thr Asn Cys Ser Phe Asn Ile Thr Thr Ser Ile Arg 115 120 125 gat aag gtg cag aaa gaa tat gca ctt ttg tat aaa ctt gat gta gta 433 Asp Lys Val Gln Lys Glu Tyr Ala Leu Leu Tyr Lys Leu Asp Val Val 130 135 140 cca ata gaa gaa gat gac aat act agc tat aga ttg ata agt tgt aac 481 Pro Ile Glu Glu Asp Asp Asn Thr Ser Tyr Arg Leu Ile Ser Cys Asn 145 150 155 160 acc tca gtc att aca cag gct tgt cca aag aca tcc ttt gag cca att 529 Thr Ser Val Ile Thr Gln Ala Cys Pro Lys Thr Ser Phe Glu Pro Ile 165 170 175 ccc ata cat tat tgt gcc ccg gct ggt ttt gcg att cta aag tgt aat 577 Pro Ile His Tyr Cys Ala Pro Ala Gly Phe Ala Ile Leu Lys Cys Asn 180 185 190 gat aag aag ttc aat gga aca gga cca tgt aaa aat gtc agc aca gta 625 Asp Lys Lys Phe Asn Gly Thr Gly Pro Cys Lys Asn Val Ser Thr Val 195 200 205 caa tgt aca cat gga att agg cca gta gta tca act caa ctg ttg tta 673 Gln Cys Thr His Gly Ile Arg Pro Val Val Ser Thr Gln Leu Leu Leu 210 215 220 aat ggc agt cta gca gaa gaa gag gta gta atc aga tct gcc aat ttc 721 Asn Gly Ser Leu Ala Glu Glu Glu Val Val Ile Arg Ser Ala Asn Phe 225 230 235 240 aca gac aat gct aaa acc ata ata gta cat cta aat gaa act gta aaa 769 Thr Asp Asn Ala Lys Thr Ile Ile Val His Leu Asn Glu Thr Val Lys 245 250 255 att aat tgt aca aga ctt ggc aac aat aca aga aaa agt ata aat ata 817 Ile Asn Cys Thr Arg Leu Gly Asn Asn Thr Arg Lys Ser Ile Asn Ile 260 265 270 gga cca ggg aga gta ctc tat gca aca gga gaa ata ata gga gac ata 865 Gly Pro Gly Arg Val Leu Tyr Ala Thr Gly Glu Ile Ile Gly Asp Ile 275 280 285 aga caa gca cat tgt aac att agt aga gca caa tgg aat aag act tta 913 Arg Gln Ala His Cys Asn Ile Ser Arg Ala Gln Trp Asn Lys Thr Leu 290 295 300 gaa aag gta gtt gac aaa tta aga aaa caa ttt ggg gat aat aca aca 961 Glu Lys Val Val Asp Lys Leu Arg Lys Gln Phe Gly Asp Asn Thr Thr 305 310 315 320 ata gct ttt aat cga tcc tca gga ggg gac cca gaa att gta atg cac 1009 Ile Ala Phe Asn Arg Ser Ser Gly Gly Asp Pro Glu Ile Val Met His 325 330 335 act ttt aat tgt gga ggg gaa ttt ttc tac tgt aat aca aca caa ctg 1057 Thr Phe Asn Cys Gly Gly Glu Phe Phe Tyr Cys Asn Thr Thr Gln Leu 340 345 350 ttt aat agt act tgg aat aat act tgg aag gat cct aac agg agt gac 1105 Phe Asn Ser Thr Trp Asn Asn Thr Trp Lys Asp Pro Asn Arg Ser Asp 355 360 365 aat atc aca ctc cca tgc aga ata aaa caa att ata aac atg tgg cag 1153 Asn Ile Thr Leu Pro Cys Arg Ile Lys Gln Ile Ile Asn Met Trp Gln 370 375 380 gaa gta gga aaa gca atg tac gcc cct ccc atc aga ggg gaa att aga 1201 Glu Val Gly Lys Ala Met Tyr Ala Pro Pro Ile Arg Gly Glu Ile Arg 385 390 395 400 tgt tca tca aat atc aca ggg ctg cta cta aca aga gat ggt ggt aat 1249 Cys Ser Ser Asn Ile Thr Gly Leu Leu Leu Thr Arg Asp Gly Gly Asn 405 410 415 gac gat ggt aat gac acg acc aca aac agg acc gag atc ttc aga cct 1297 Asp Asp Gly Asn Asp Thr Thr Thr Asn Arg Thr Glu Ile Phe Arg Pro 420 425 430 gga gga gga gat atg agg gac aat tgg aga agt gaa tta tat aga tat 1345 Gly Gly Gly Asp Met Arg Asp Asn Trp Arg Ser Glu Leu Tyr Arg Tyr 435 440 445 aaa gta gta aaa att gaa cca tta gga ata gca ccc acc agg gca aag 1393 Lys Val Val Lys Ile Glu Pro Leu Gly Ile Ala Pro Thr Arg Ala Lys 450 455 460 aga aga gtg gtg cag aga gaa aaa aga gca gta gga cta gga gct ttg 1441 Arg Arg Val Val Gln Arg Glu Lys Arg Ala Val Gly Leu Gly Ala Leu 465 470 475 480 ttc ctt ggg ttcttaggag cataaagctt ctaga 1475 Phe Leu Gly 31 483 PRT HIV 31 Val Pro Val Trp Lys Glu Ala Asn Thr Thr Leu Phe Cys Ala Ser Asp 1 5 10 15 Ala Lys Ala Tyr Asp Arg Glu Val His Asn Val Trp Ala Thr His Ala 20 25 30 Cys Val Pro Thr Asp Pro Asn Pro Gln Glu Ile Val Leu Gly Asn Val 35 40 45 Thr Glu Asn Phe Asn Met Trp Lys Asn Asn Met Val Glu Gln Met His 50 55 60 Glu Asp Ile Ile Asn Leu Trp Asp Gln Ser Leu Lys Pro Cys Val Lys 65 70 75 80 Leu Thr Pro Leu Cys Val Thr Leu Lys Cys Lys Asp Leu Glu Arg Asn 85 90 95 Thr Thr Tyr Asn Ser Thr Ile Thr Asn Asn Ser Ser Leu Glu Gly Leu 100 105 110 Arg Glu Gln Met Thr Asn Cys Ser Phe Asn Ile Thr Thr Ser Ile Arg 115 120 125 Asp Lys Val Gln Lys Glu Tyr Ala Leu Leu Tyr Lys Leu Asp Val Val 130 135 140 Pro Ile Glu Glu Asp Asp Asn Thr Ser Tyr Arg Leu Ile Ser Cys Asn 145 150 155 160 Thr Ser Val Ile Thr Gln Ala Cys Pro Lys Thr Ser Phe Glu Pro Ile 165 170 175 Pro Ile His Tyr Cys Ala Pro Ala Gly Phe Ala Ile Leu Lys Cys Asn 180 185 190 Asp Lys Lys Phe Asn Gly Thr Gly Pro Cys Lys Asn Val Ser Thr Val 195 200 205 Gln Cys Thr His Gly Ile Arg Pro Val Val Ser Thr Gln Leu Leu Leu 210 215 220 Asn Gly Ser Leu Ala Glu Glu Glu Val Val Ile Arg Ser Ala Asn Phe 225 230 235 240 Thr Asp Asn Ala Lys Thr Ile Ile Val His Leu Asn Glu Thr Val Lys 245 250 255 Ile Asn Cys Thr Arg Leu Gly Asn Asn Thr Arg Lys Ser Ile Asn Ile 260 265 270 Gly Pro Gly Arg Val Leu Tyr Ala Thr Gly Glu Ile Ile Gly Asp Ile 275 280 285 Arg Gln Ala His Cys Asn Ile Ser Arg Ala Gln Trp Asn Lys Thr Leu 290 295 300 Glu Lys Val Val Asp Lys Leu Arg Lys Gln Phe Gly Asp Asn Thr Thr 305 310 315 320 Ile Ala Phe Asn Arg Ser Ser Gly Gly Asp Pro Glu Ile Val Met His 325 330 335 Thr Phe Asn Cys Gly Gly Glu Phe Phe Tyr Cys Asn Thr Thr Gln Leu 340 345 350 Phe Asn Ser Thr Trp Asn Asn Thr Trp Lys Asp Pro Asn Arg Ser Asp 355 360 365 Asn Ile Thr Leu Pro Cys Arg Ile Lys Gln Ile Ile Asn Met Trp Gln 370 375 380 Glu Val Gly Lys Ala Met Tyr Ala Pro Pro Ile Arg Gly Glu Ile Arg 385 390 395 400 Cys Ser Ser Asn Ile Thr Gly Leu Leu Leu Thr Arg Asp Gly Gly Asn 405 410 415 Asp Asp Gly Asn Asp Thr Thr Thr Asn Arg Thr Glu Ile Phe Arg Pro 420 425 430 Gly Gly Gly Asp Met Arg Asp Asn Trp Arg Ser Glu Leu Tyr Arg Tyr 435 440 445 Lys Val Val Lys Ile Glu Pro Leu Gly Ile Ala Pro Thr Arg Ala Lys 450 455 460 Arg Arg Val Val Gln Arg Glu Lys Arg Ala Val Gly Leu Gly Ala Leu 465 470 475 480 Phe Leu Gly 32 1475 DNA HIV CDS (2)...(1474) 32 g gta cct gtg tgg aaa gaa gca aac aca act cta ttt tgt gca tca gat 49 Val Pro Val Trp Lys Glu Ala Asn Thr Thr Leu Phe Cys Ala Ser Asp 1 5 10 15 gct aaa gca tat gat aga gaa gta cat aat gtt tgg gca aca cat gcc 97 Ala Lys Ala Tyr Asp Arg Glu Val His Asn Val Trp Ala Thr His Ala 20 25 30 tgt gta ccc aca gac ccc aac cca caa gaa ata gta ttg gga aat gtg 145 Cys Val Pro Thr Asp Pro Asn Pro Gln Glu Ile Val Leu Gly Asn Val 35 40 45 aca gaa aat ttt aac atg tgg aaa aat aac atg gta gaa caa atg cat 193 Thr Glu Asn Phe Asn Met Trp Lys Asn Asn Met Val Glu Gln Met His 50 55 60 gag gat ata atc aat tta tgg gat caa agc tta aag cca tgt gta aag 241 Glu Asp Ile Ile Asn Leu Trp Asp Gln Ser Leu Lys Pro Cys Val Lys 65 70 75 80 tta act cca ctc tgt gtt act tta aag tgc aag gat ctg gag agg aat 289 Leu Thr Pro Leu Cys Val Thr Leu Lys Cys Lys Asp Leu Glu Arg Asn 85 90 95 act acc tat aat agc act att acc aat aat agt agt ttg gag gga cta 337 Thr Thr Tyr Asn Ser Thr Ile Thr Asn Asn Ser Ser Leu Glu Gly Leu 100 105 110 aga gaa caa atg aca aac tgc tct ttc aac atc acc aca agt ata aga 385 Arg Glu Gln Met Thr Asn Cys Ser Phe Asn Ile Thr Thr Ser Ile Arg 115 120 125 gat aag gtg cag aaa gaa tat gca ctt ttg tat aaa ctt gat gta gta 433 Asp Lys Val Gln Lys Glu Tyr Ala Leu Leu Tyr Lys Leu Asp Val Val 130 135 140 cca ata gaa gaa gat gac aat act agc tat aga ttg ata agt tgt aac 481 Pro Ile Glu Glu Asp Asp Asn Thr Ser Tyr Arg Leu Ile Ser Cys Asn 145 150 155 160 acc tca gtc att aca cag gct tgt cca aag aca tcc ttt gag cca att 529 Thr Ser Val Ile Thr Gln Ala Cys Pro Lys Thr Ser Phe Glu Pro Ile 165 170 175 ccc ata cat tat tgt gcc ccg gct ggt ttt gcg att cta aag tgt aat 577 Pro Ile His Tyr Cys Ala Pro Ala Gly Phe Ala Ile Leu Lys Cys Asn 180 185 190 gat aag aag ttc aat gga aca gga cca tgt aaa aat gtc agc aca gta 625 Asp Lys Lys Phe Asn Gly Thr Gly Pro Cys Lys Asn Val Ser Thr Val 195 200 205 caa tgt aca cat gga att agg cca gta gta tca act caa ctg ttg tta 673 Gln Cys Thr His Gly Ile Arg Pro Val Val Ser Thr Gln Leu Leu Leu 210 215 220 aat ggc agt cta gca gaa gaa gag gta gta atc aga tct gcc aat ttc 721 Asn Gly Ser Leu Ala Glu Glu Glu Val Val Ile Arg Ser Ala Asn Phe 225 230 235 240 aca gac aat gct aaa acc ata ata gta cat cta aat gaa act gta aaa 769 Thr Asp Asn Ala Lys Thr Ile Ile Val His Leu Asn Glu Thr Val Lys 245 250 255 att aat tgt aca aga ctt ggc aac aat aca aga aaa agt ata aat ata 817 Ile Asn Cys Thr Arg Leu Gly Asn Asn Thr Arg Lys Ser Ile Asn Ile 260 265 270 gga cca ggg aga gta ctc tat gca aca gga gaa ata ata gga gac ata 865 Gly Pro Gly Arg Val Leu Tyr Ala Thr Gly Glu Ile Ile Gly Asp Ile 275 280 285 aga caa gca cat tgt aac att agt aga gca caa tgg aat aag act tta 913 Arg Gln Ala His Cys Asn Ile Ser Arg Ala Gln Trp Asn Lys Thr Leu 290 295 300 gaa aag gta gtt gac aag tta aga aaa caa ttt ggg gat aat aca aca 961 Glu Lys Val Val Asp Lys Leu Arg Lys Gln Phe Gly Asp Asn Thr Thr 305 310 315 320 ata gct ttt aat cga tcc tca gga ggg gac cca gaa att gta atg cac 1009 Ile Ala Phe Asn Arg Ser Ser Gly Gly Asp Pro Glu Ile Val Met His 325 330 335 act ttt aat tgt gga ggg gaa ttt ttc tac tgt aat aca aca caa ctg 1057 Thr Phe Asn Cys Gly Gly Glu Phe Phe Tyr Cys Asn Thr Thr Gln Leu 340 345 350 ttt aat agt act tgg aat aat act tgg aag gat cct aac agg agt gac 1105 Phe Asn Ser Thr Trp Asn Asn Thr Trp Lys Asp Pro Asn Arg Ser Asp 355 360 365 aat atc aca ctc cca tgc aga ata aaa caa att ata aac atg tgg cag 1153 Asn Ile Thr Leu Pro Cys Arg Ile Lys Gln Ile Ile Asn Met Trp Gln 370 375 380 gaa gta gga aaa gca atg tac gcc cct ccc atc aga ggg gaa att aga 1201 Glu Val Gly Lys Ala Met Tyr Ala Pro Pro Ile Arg Gly Glu Ile Arg 385 390 395 400 tgt tca tca aat atc aca ggg ctg cta cta aca aga gat ggt ggt aat 1249 Cys Ser Ser Asn Ile Thr Gly Leu Leu Leu Thr Arg Asp Gly Gly Asn 405 410 415 gac gat ggt aat gac acg acc aca aac agg acc gag atc ttc aga cct 1297 Asp Asp Gly Asn Asp Thr Thr Thr Asn Arg Thr Glu Ile Phe Arg Pro 420 425 430 gga gga gga gat atg agg gac aat tgg aga agt gaa tta tat aga tat 1345 Gly Gly Gly Asp Met Arg Asp Asn Trp Arg Ser Glu Leu Tyr Arg Tyr 435 440 445 aaa gta gta aaa att gaa cca tta gga ata gca ccc acc agg gca aag 1393 Lys Val Val Lys Ile Glu Pro Leu Gly Ile Ala Pro Thr Arg Ala Lys 450 455 460 aga aga gtg gtg cag aga gaa aaa aga gca gta gga cta gga gct ttg 1441 Arg Arg Val Val Gln Arg Glu Lys Arg Ala Val Gly Leu Gly Ala Leu 465 470 475 480 ttc ctt ggg ttc ttg gga gca taa agc ttc tag a 1475 Phe Leu Gly Phe Leu Gly Ala * Ser Phe * 485 33 487 PRT HIV 33 Val Pro Val Trp Lys Glu Ala Asn Thr Thr Leu Phe Cys Ala Ser Asp 1 5 10 15 Ala Lys Ala Tyr Asp Arg Glu Val His Asn Val Trp Ala Thr His Ala 20 25 30 Cys Val Pro Thr Asp Pro Asn Pro Gln Glu Ile Val Leu Gly Asn Val 35 40 45 Thr Glu Asn Phe Asn Met Trp Lys Asn Asn Met Val Glu Gln Met His 50 55 60 Glu Asp Ile Ile Asn Leu Trp Asp Gln Ser Leu Lys Pro Cys Val Lys 65 70 75 80 Leu Thr Pro Leu Cys Val Thr Leu Lys Cys Lys Asp Leu Glu Arg Asn 85 90 95 Thr Thr Tyr Asn Ser Thr Ile Thr Asn Asn Ser Ser Leu Glu Gly Leu 100 105 110 Arg Glu Gln Met Thr Asn Cys Ser Phe Asn Ile Thr Thr Ser Ile Arg 115 120 125 Asp Lys Val Gln Lys Glu Tyr Ala Leu Leu Tyr Lys Leu Asp Val Val 130 135 140 Pro Ile Glu Glu Asp Asp Asn Thr Ser Tyr Arg Leu Ile Ser Cys Asn 145 150 155 160 Thr Ser Val Ile Thr Gln Ala Cys Pro Lys Thr Ser Phe Glu Pro Ile 165 170 175 Pro Ile His Tyr Cys Ala Pro Ala Gly Phe Ala Ile Leu Lys Cys Asn 180 185 190 Asp Lys Lys Phe Asn Gly Thr Gly Pro Cys Lys Asn Val Ser Thr Val 195 200 205 Gln Cys Thr His Gly Ile Arg Pro Val Val Ser Thr Gln Leu Leu Leu 210 215 220 Asn Gly Ser Leu Ala Glu Glu Glu Val Val Ile Arg Ser Ala Asn Phe 225 230 235 240 Thr Asp Asn Ala Lys Thr Ile Ile Val His Leu Asn Glu Thr Val Lys 245 250 255 Ile Asn Cys Thr Arg Leu Gly Asn Asn Thr Arg Lys Ser Ile Asn Ile 260 265 270 Gly Pro Gly Arg Val Leu Tyr Ala Thr Gly Glu Ile Ile Gly Asp Ile 275 280 285 Arg Gln Ala His Cys Asn Ile Ser Arg Ala Gln Trp Asn Lys Thr Leu 290 295 300 Glu Lys Val Val Asp Lys Leu Arg Lys Gln Phe Gly Asp Asn Thr Thr 305 310 315 320 Ile Ala Phe Asn Arg Ser Ser Gly Gly Asp Pro Glu Ile Val Met His 325 330 335 Thr Phe Asn Cys Gly Gly Glu Phe Phe Tyr Cys Asn Thr Thr Gln Leu 340 345 350 Phe Asn Ser Thr Trp Asn Asn Thr Trp Lys Asp Pro Asn Arg Ser Asp 355 360 365 Asn Ile Thr Leu Pro Cys Arg Ile Lys Gln Ile Ile Asn Met Trp Gln 370 375 380 Glu Val Gly Lys Ala Met Tyr Ala Pro Pro Ile Arg Gly Glu Ile Arg 385 390 395 400 Cys Ser Ser Asn Ile Thr Gly Leu Leu Leu Thr Arg Asp Gly Gly Asn 405 410 415 Asp Asp Gly Asn Asp Thr Thr Thr Asn Arg Thr Glu Ile Phe Arg Pro 420 425 430 Gly Gly Gly Asp Met Arg Asp Asn Trp Arg Ser Glu Leu Tyr Arg Tyr 435 440 445 Lys Val Val Lys Ile Glu Pro Leu Gly Ile Ala Pro Thr Arg Ala Lys 450 455 460 Arg Arg Val Val Gln Arg Glu Lys Arg Ala Val Gly Leu Gly Ala Leu 465 470 475 480 Phe Leu Gly Phe Leu Gly Ala 485 34 2 PRT HIV 34 Ser Phe 1 35 1435 DNA HIV CDS (1)...(1434) 35 ctc gag gta cct gtg tgg aaa gaa gca acc acc act cta ttt tgt gca 48 Leu Glu Val Pro Val Trp Lys Glu Ala Thr Thr Thr Leu Phe Cys Ala 1 5 10 15 tca gat gct aaa gca tat gat tca gag gca cat aat gtt tgg gcc aca 96 Ser Asp Ala Lys Ala Tyr Asp Ser Glu Ala His Asn Val Trp Ala Thr 20 25 30 cat gcc tgt gta ccc aca gac ccc aac cca caa gaa gta gaa ttg gaa 144 His Ala Cys Val Pro Thr Asp Pro Asn Pro Gln Glu Val Glu Leu Glu 35 40 45 aat gtg aca gaa aat ttt aac atg tgg aaa aat aac atg gta gaa cag 192 Asn Val Thr Glu Asn Phe Asn Met Trp Lys Asn Asn Met Val Glu Gln 50 55 60 atg cat ggg gat ata att agt tta tgg gat caa agc cta aag cca tgt 240 Met His Gly Asp Ile Ile Ser Leu Trp Asp Gln Ser Leu Lys Pro Cys 65 70 75 80 gta aaa tta acc cca ctc tgt gtt acg tta aat tgc act gac cca aat 288 Val Lys Leu Thr Pro Leu Cys Val Thr Leu Asn Cys Thr Asp Pro Asn 85 90 95 gtt act aat agc gag aga acg ata gag ggg gga gaa ata aaa aat tgc 336 Val Thr Asn Ser Glu Arg Thr Ile Glu Gly Gly Glu Ile Lys Asn Cys 100 105 110 tct ttc aat atc acc aca aac ata aga gat agg ttt cag aaa gaa tat 384 Ser Phe Asn Ile Thr Thr Asn Ile Arg Asp Arg Phe Gln Lys Glu Tyr 115 120 125 gca ctt ttt tat aaa ctt gat gta ata cca tta ggt aat gat aat act 432 Ala Leu Phe Tyr Lys Leu Asp Val Ile Pro Leu Gly Asn Asp Asn Thr 130 135 140 agc tat agg ttg ata agt tgt aac acc tca gtc att aca cag gcc tgt 480 Ser Tyr Arg Leu Ile Ser Cys Asn Thr Ser Val Ile Thr Gln Ala Cys 145 150 155 160 cca aag gta tcc ttt gag cca att ccc ata cat tat tgt gcc ccg gct 528 Pro Lys Val Ser Phe Glu Pro Ile Pro Ile His Tyr Cys Ala Pro Ala 165 170 175 ggt ttt gcg att cta aag tgt aaa gat aag aag ttc aat gga aca gga 576 Gly Phe Ala Ile Leu Lys Cys Lys Asp Lys Lys Phe Asn Gly Thr Gly 180 185 190 cca tgt aca aat gtc agc aca gta caa tgt aca cat gga att aag cca 624 Pro Cys Thr Asn Val Ser Thr Val Gln Cys Thr His Gly Ile Lys Pro 195 200 205 gta gta tca act caa ctg ttg tta aat ggc agt cta gca gaa gaa gac 672 Val Val Ser Thr Gln Leu Leu Leu Asn Gly Ser Leu Ala Glu Glu Asp 210 215 220 ata gta att aga tcc gcc aat ctc aca gac aat gct aaa aac ata ata 720 Ile Val Ile Arg Ser Ala Asn Leu Thr Asp Asn Ala Lys Asn Ile Ile 225 230 235 240 gta cag ctg aat gaa tct gta aca atg aat tgt aca aga ccc aac aac 768 Val Gln Leu Asn Glu Ser Val Thr Met Asn Cys Thr Arg Pro Asn Asn 245 250 255 aat aca atg aaa agt ata cat ata gga cca ggc aga gca ttt tat gca 816 Asn Thr Met Lys Ser Ile His Ile Gly Pro Gly Arg Ala Phe Tyr Ala 260 265 270 aca gga aac ata ata gga gat ata aga caa gca cat tgt aac att agt 864 Thr Gly Asn Ile Ile Gly Asp Ile Arg Gln Ala His Cys Asn Ile Ser 275 280 285 gga aca aaa tgg aat gac act ttg aaa aag ata gct ata aaa tta aga 912 Gly Thr Lys Trp Asn Asp Thr Leu Lys Lys Ile Ala Ile Lys Leu Arg 290 295 300 gaa caa ttt aat aag aca ata gtc ttt aat caa tcc tca gga ggg gac 960 Glu Gln Phe Asn Lys Thr Ile Val Phe Asn Gln Ser Ser Gly Gly Asp 305 310 315 320 cca gaa att gca acg ctc agt ttt aat tgt gga ggg gaa ttt ttc tac 1008 Pro Glu Ile Ala Thr Leu Ser Phe Asn Cys Gly Gly Glu Phe Phe Tyr 325 330 335 tgt aat tca aca caa ctg ttt aat agt act tgg aat agt act ggg tca 1056 Cys Asn Ser Thr Gln Leu Phe Asn Ser Thr Trp Asn Ser Thr Gly Ser 340 345 350 aat aac act aaa gga aat gac aca atc aca ctc cca tgc aga ata aga 1104 Asn Asn Thr Lys Gly Asn Asp Thr Ile Thr Leu Pro Cys Arg Ile Arg 355 360 365 caa att ata aac atg tgg cag aaa ata gga aaa gca atg tat gcc cct 1152 Gln Ile Ile Asn Met Trp Gln Lys Ile Gly Lys Ala Met Tyr Ala Pro 370 375 380 ccc atc aaa ggg caa att aga tgt tca tca aat att aca ggg cta ata 1200 Pro Ile Lys Gly Gln Ile Arg Cys Ser Ser Asn Ile Thr Gly Leu Ile 385 390 395 400 tta aca aga gat ggt ggt aac aac aac atg agc aag acc acc gag acc 1248 Leu Thr Arg Asp Gly Gly Asn Asn Asn Met Ser Lys Thr Thr Glu Thr 405 410 415 ttc aga cct gga gga gga gat atg agg gac aat tgg aga agt gaa tta 1296 Phe Arg Pro Gly Gly Gly Asp Met Arg Asp Asn Trp Arg Ser Glu Leu 420 425 430 tat aaa tat aaa gta gta aaa att gaa cca tta gga gta gca ccc acc 1344 Tyr Lys Tyr Lys Val Val Lys Ile Glu Pro Leu Gly Val Ala Pro Thr 435 440 445 agg gca aag aga aga gtg gtg cag aga gaa aaa aga gca gtg gga ata 1392 Arg Ala Lys Arg Arg Val Val Gln Arg Glu Lys Arg Ala Val Gly Ile 450 455 460 gga gct gtg ttc ctt ggg ttc ttg gga gca taa agc ttc tag 1434 Gly Ala Val Phe Leu Gly Phe Leu Gly Ala * Ser Phe * 465 470 475 a 1435 36 474 PRT HIV 36 Leu Glu Val Pro Val Trp Lys Glu Ala Thr Thr Thr Leu Phe Cys Ala 1 5 10 15 Ser Asp Ala Lys Ala Tyr Asp Ser Glu Ala His Asn Val Trp Ala Thr 20 25 30 His Ala Cys Val Pro Thr Asp Pro Asn Pro Gln Glu Val Glu Leu Glu 35 40 45 Asn Val Thr Glu Asn Phe Asn Met Trp Lys Asn Asn Met Val Glu Gln 50 55 60 Met His Gly Asp Ile Ile Ser Leu Trp Asp Gln Ser Leu Lys Pro Cys 65 70 75 80 Val Lys Leu Thr Pro Leu Cys Val Thr Leu Asn Cys Thr Asp Pro Asn 85 90 95 Val Thr Asn Ser Glu Arg Thr Ile Glu Gly Gly Glu Ile Lys Asn Cys 100 105 110 Ser Phe Asn Ile Thr Thr Asn Ile Arg Asp Arg Phe Gln Lys Glu Tyr 115 120 125 Ala Leu Phe Tyr Lys Leu Asp Val Ile Pro Leu Gly Asn Asp Asn Thr 130 135 140 Ser Tyr Arg Leu Ile Ser Cys Asn Thr Ser Val Ile Thr Gln Ala Cys 145 150 155 160 Pro Lys Val Ser Phe Glu Pro Ile Pro Ile His Tyr Cys Ala Pro Ala 165 170 175 Gly Phe Ala Ile Leu Lys Cys Lys Asp Lys Lys Phe Asn Gly Thr Gly 180 185 190 Pro Cys Thr Asn Val Ser Thr Val Gln Cys Thr His Gly Ile Lys Pro 195 200 205 Val Val Ser Thr Gln Leu Leu Leu Asn Gly Ser Leu Ala Glu Glu Asp 210 215 220 Ile Val Ile Arg Ser Ala Asn Leu Thr Asp Asn Ala Lys Asn Ile Ile 225 230 235 240 Val Gln Leu Asn Glu Ser Val Thr Met Asn Cys Thr Arg Pro Asn Asn 245 250 255 Asn Thr Met Lys Ser Ile His Ile Gly Pro Gly Arg Ala Phe Tyr Ala 260 265 270 Thr Gly Asn Ile Ile Gly Asp Ile Arg Gln Ala His Cys Asn Ile Ser 275 280 285 Gly Thr Lys Trp Asn Asp Thr Leu Lys Lys Ile Ala Ile Lys Leu Arg 290 295 300 Glu Gln Phe Asn Lys Thr Ile Val Phe Asn Gln Ser Ser Gly Gly Asp 305 310 315 320 Pro Glu Ile Ala Thr Leu Ser Phe Asn Cys Gly Gly Glu Phe Phe Tyr 325 330 335 Cys Asn Ser Thr Gln Leu Phe Asn Ser Thr Trp Asn Ser Thr Gly Ser 340 345 350 Asn Asn Thr Lys Gly Asn Asp Thr Ile Thr Leu Pro Cys Arg Ile Arg 355 360 365 Gln Ile Ile Asn Met Trp Gln Lys Ile Gly Lys Ala Met Tyr Ala Pro 370 375 380 Pro Ile Lys Gly Gln Ile Arg Cys Ser Ser Asn Ile Thr Gly Leu Ile 385 390 395 400 Leu Thr Arg Asp Gly Gly Asn Asn Asn Met Ser Lys Thr Thr Glu Thr 405 410 415 Phe Arg Pro Gly Gly Gly Asp Met Arg Asp Asn Trp Arg Ser Glu Leu 420 425 430 Tyr Lys Tyr Lys Val Val Lys Ile Glu Pro Leu Gly Val Ala Pro Thr 435 440 445 Arg Ala Lys Arg Arg Val Val Gln Arg Glu Lys Arg Ala Val Gly Ile 450 455 460 Gly Ala Val Phe Leu Gly Phe Leu Gly Ala 465 470 37 2 PRT HIV 37 Ser Phe 1 38 1435 DNA HIV CDS (1)...(1434) 38 ctc gag gta cct gtg tgg aaa gaa gca acc acc act cta ttt tgt gca 48 Leu Glu Val Pro Val Trp Lys Glu Ala Thr Thr Thr Leu Phe Cys Ala 1 5 10 15 tca gat gct aaa gca tat gat tca gag gca cat aat gtt tgg gcc aca 96 Ser Asp Ala Lys Ala Tyr Asp Ser Glu Ala His Asn Val Trp Ala Thr 20 25 30 cat gcc tgt gta ccc aca gac ccc aac cca caa gaa gta gaa ttg gaa 144 His Ala Cys Val Pro Thr Asp Pro Asn Pro Gln Glu Val Glu Leu Glu 35 40 45 aat gtg aca gaa aat ttt aac atg tgg aaa aat aac atg gta gaa cag 192 Asn Val Thr Glu Asn Phe Asn Met Trp Lys Asn Asn Met Val Glu Gln 50 55 60 atg cat ggg gat ata att agt tta tgg gat caa agc cta aag cca tgt 240 Met His Gly Asp Ile Ile Ser Leu Trp Asp Gln Ser Leu Lys Pro Cys 65 70 75 80 gta aaa tta acc cca ctc tgt gtt acg tta aat tgc act gac cca aat 288 Val Lys Leu Thr Pro Leu Cys Val Thr Leu Asn Cys Thr Asp Pro Asn 85 90 95 gtt act aat agc gag aga acg ata gag ggg gga gaa ata aaa aat tgc 336 Val Thr Asn Ser Glu Arg Thr Ile Glu Gly Gly Glu Ile Lys Asn Cys 100 105 110 tct ttc aat atc acc aca aac ata aga gat agg ttt cag aaa gaa tat 384 Ser Phe Asn Ile Thr Thr Asn Ile Arg Asp Arg Phe Gln Lys Glu Tyr 115 120 125 gca ctt ttt tat aaa ctt gat gta ata cca tta ggt aat gat aat act 432 Ala Leu Phe Tyr Lys Leu Asp Val Ile Pro Leu Gly Asn Asp Asn Thr 130 135 140 agc tat agg ttg ata agt tgt aac acc tca gtc att aca cag gcc tgt 480 Ser Tyr Arg Leu Ile Ser Cys Asn Thr Ser Val Ile Thr Gln Ala Cys 145 150 155 160 cca aag gta tcc ttt gag cca att ccc ata cat tat tgt gcc ccg gct 528 Pro Lys Val Ser Phe Glu Pro Ile Pro Ile His Tyr Cys Ala Pro Ala 165 170 175 ggt ttt gcg att cta aag tgt aaa gat aag aag ttc aat gga aca gga 576 Gly Phe Ala Ile Leu Lys Cys Lys Asp Lys Lys Phe Asn Gly Thr Gly 180 185 190 cca tgt aca aat gtc agc aca gta caa tgt aca cat gga att aag cca 624 Pro Cys Thr Asn Val Ser Thr Val Gln Cys Thr His Gly Ile Lys Pro 195 200 205 gta gta tca act caa ctg ttg tta aat ggc agt cta gca gaa gaa gac 672 Val Val Ser Thr Gln Leu Leu Leu Asn Gly Ser Leu Ala Glu Glu Asp 210 215 220 ata gta att aga tcc gcc aat ctc aca gac aat gct aaa aac ata ata 720 Ile Val Ile Arg Ser Ala Asn Leu Thr Asp Asn Ala Lys Asn Ile Ile 225 230 235 240 gta cag ctg aat gaa tct gta aca atg aat tgt aca aga ccc aac aac 768 Val Gln Leu Asn Glu Ser Val Thr Met Asn Cys Thr Arg Pro Asn Asn 245 250 255 aat aca atg aaa agt ata cat ata gga cca ggc aga gca ttt tat gca 816 Asn Thr Met Lys Ser Ile His Ile Gly Pro Gly Arg Ala Phe Tyr Ala 260 265 270 aca gga aac ata ata gga gat ata aga caa gca cat tgt aac att agt 864 Thr Gly Asn Ile Ile Gly Asp Ile Arg Gln Ala His Cys Asn Ile Ser 275 280 285 gga aca aaa tgg aat gac act ttg aaa aag ata gct ata aaa tta aga 912 Gly Thr Lys Trp Asn Asp Thr Leu Lys Lys Ile Ala Ile Lys Leu Arg 290 295 300 gaa caa ttt aat aag aca ata gtc ttt aat caa tcc tca gga ggg gac 960 Glu Gln Phe Asn Lys Thr Ile Val Phe Asn Gln Ser Ser Gly Gly Asp 305 310 315 320 cca gaa att gca acg ctc agt ttt aat tgt gga ggg gaa ttt ttc tac 1008 Pro Glu Ile Ala Thr Leu Ser Phe Asn Cys Gly Gly Glu Phe Phe Tyr 325 330 335 tgt aat tca aca caa ctg ttt aat agt act tgg aat agt act ggg tca 1056 Cys Asn Ser Thr Gln Leu Phe Asn Ser Thr Trp Asn Ser Thr Gly Ser 340 345 350 aat aac act aaa gga aat gac aca atc aca ctc cca tgc aga ata aga 1104 Asn Asn Thr Lys Gly Asn Asp Thr Ile Thr Leu Pro Cys Arg Ile Arg 355 360 365 caa att ata aac atg tgg cag aaa ata gga aaa gca atg tat gcc cct 1152 Gln Ile Ile Asn Met Trp Gln Lys Ile Gly Lys Ala Met Tyr Ala Pro 370 375 380 ccc atc aaa ggg caa att aga tgt tca tca aat att aca ggg cta ata 1200 Pro Ile Lys Gly Gln Ile Arg Cys Ser Ser Asn Ile Thr Gly Leu Ile 385 390 395 400 tta aca aga gat ggt ggt aac aac aac atg agc aag acc acc gag acc 1248 Leu Thr Arg Asp Gly Gly Asn Asn Asn Met Ser Lys Thr Thr Glu Thr 405 410 415 ttc aga cct gga gga gga gat atg agg gac aat tgg aga agt gaa tta 1296 Phe Arg Pro Gly Gly Gly Asp Met Arg Asp Asn Trp Arg Ser Glu Leu 420 425 430 tat aaa tat aaa gta gta aaa att gaa cca tta gga gta gca ccc acc 1344 Tyr Lys Tyr Lys Val Val Lys Ile Glu Pro Leu Gly Val Ala Pro Thr 435 440 445 agg gca aag aga aga gtg gtg cag aga gaa aaa aga gca gtg gga ata 1392 Arg Ala Lys Arg Arg Val Val Gln Arg Glu Lys Arg Ala Val Gly Ile 450 455 460 gga gct gtg ttc ctt ggg ttc ttg gga gca taa agc ttc tag 1434 Gly Ala Val Phe Leu Gly Phe Leu Gly Ala * Ser Phe * 465 470 475 a 1435 39 474 PRT HIV 39 Leu Glu Val Pro Val Trp Lys Glu Ala Thr Thr Thr Leu Phe Cys Ala 1 5 10 15 Ser Asp Ala Lys Ala Tyr Asp Ser Glu Ala His Asn Val Trp Ala Thr 20 25 30 His Ala Cys Val Pro Thr Asp Pro Asn Pro Gln Glu Val Glu Leu Glu 35 40 45 Asn Val Thr Glu Asn Phe Asn Met Trp Lys Asn Asn Met Val Glu Gln 50 55 60 Met His Gly Asp Ile Ile Ser Leu Trp Asp Gln Ser Leu Lys Pro Cys 65 70 75 80 Val Lys Leu Thr Pro Leu Cys Val Thr Leu Asn Cys Thr Asp Pro Asn 85 90 95 Val Thr Asn Ser Glu Arg Thr Ile Glu Gly Gly Glu Ile Lys Asn Cys 100 105 110 Ser Phe Asn Ile Thr Thr Asn Ile Arg Asp Arg Phe Gln Lys Glu Tyr 115 120 125 Ala Leu Phe Tyr Lys Leu Asp Val Ile Pro Leu Gly Asn Asp Asn Thr 130 135 140 Ser Tyr Arg Leu Ile Ser Cys Asn Thr Ser Val Ile Thr Gln Ala Cys 145 150 155 160 Pro Lys Val Ser Phe Glu Pro Ile Pro Ile His Tyr Cys Ala Pro Ala 165 170 175 Gly Phe Ala Ile Leu Lys Cys Lys Asp Lys Lys Phe Asn Gly Thr Gly 180 185 190 Pro Cys Thr Asn Val Ser Thr Val Gln Cys Thr His Gly Ile Lys Pro 195 200 205 Val Val Ser Thr Gln Leu Leu Leu Asn Gly Ser Leu Ala Glu Glu Asp 210 215 220 Ile Val Ile Arg Ser Ala Asn Leu Thr Asp Asn Ala Lys Asn Ile Ile 225 230 235 240 Val Gln Leu Asn Glu Ser Val Thr Met Asn Cys Thr Arg Pro Asn Asn 245 250 255 Asn Thr Met Lys Ser Ile His Ile Gly Pro Gly Arg Ala Phe Tyr Ala 260 265 270 Thr Gly Asn Ile Ile Gly Asp Ile Arg Gln Ala His Cys Asn Ile Ser 275 280 285 Gly Thr Lys Trp Asn Asp Thr Leu Lys Lys Ile Ala Ile Lys Leu Arg 290 295 300 Glu Gln Phe Asn Lys Thr Ile Val Phe Asn Gln Ser Ser Gly Gly Asp 305 310 315 320 Pro Glu Ile Ala Thr Leu Ser Phe Asn Cys Gly Gly Glu Phe Phe Tyr 325 330 335 Cys Asn Ser Thr Gln Leu Phe Asn Ser Thr Trp Asn Ser Thr Gly Ser 340 345 350 Asn Asn Thr Lys Gly Asn Asp Thr Ile Thr Leu Pro Cys Arg Ile Arg 355 360 365 Gln Ile Ile Asn Met Trp Gln Lys Ile Gly Lys Ala Met Tyr Ala Pro 370 375 380 Pro Ile Lys Gly Gln Ile Arg Cys Ser Ser Asn Ile Thr Gly Leu Ile 385 390 395 400 Leu Thr Arg Asp Gly Gly Asn Asn Asn Met Ser Lys Thr Thr Glu Thr 405 410 415 Phe Arg Pro Gly Gly Gly Asp Met Arg Asp Asn Trp Arg Ser Glu Leu 420 425 430 Tyr Lys Tyr Lys Val Val Lys Ile Glu Pro Leu Gly Val Ala Pro Thr 435 440 445 Arg Ala Lys Arg Arg Val Val Gln Arg Glu Lys Arg Ala Val Gly Ile 450 455 460 Gly Ala Val Phe Leu Gly Phe Leu Gly Ala 465 470 40 2 PRT HIV 40 Ser Phe 1 41 511 PRT HIV 41 Met Arg Val Lys Gly Ile Arg Arg Asn Tyr Gln His Trp Trp Gly Arg 1 5 10 15 Gly Thr Met Leu Leu Gly Leu Leu Met Ile Cys Ser Ala Thr Glu Lys 20 25 30 Leu Trp Val Thr Val Tyr Tyr Gly Val Pro Val Trp Lys Glu Ala Thr 35 40 45 Thr Thr Leu Phe Cys Ala Ser Asp Ala Lys Ala Tyr Asp Thr Glu Ala 50 55 60 His Asn Val Trp Ala Thr His Ala Cys Val Pro Thr Asp Pro Asn Pro 65 70 75 80 Gln Glu Val Glu Leu Val Asn Val Thr Glu Asn Phe Asn Met Trp Lys 85 90 95 Asn Asn Met Val Glu Gln Met His Glu Asp Ile Ile Ser Leu Trp Asn 100 105 110 Gln Ser Leu Lys Pro Cys Val Lys Leu Thr Pro Leu Cys Val Thr Leu 115 120 125 Asn Cys Thr Asp Leu Arg Asn Thr Thr Asn Thr Asn Asn Ser Thr Asp 130 135 140 Asn Asn Asn Ser Lys Ser Glu Gly Thr Ile Lys Gly Gly Glu Met Lys 145 150 155 160 Asn Cys Ser Phe Asn Ile Thr Thr Ser Ile Gly Asp Lys Met Gln Lys 165 170 175 Glu Tyr Ala Leu Leu Tyr Lys Leu Asp Ile Glu Pro Ile Asp Asn Asp 180 185 190 Ser Thr Ser Tyr Arg Leu Ile Ser Cys Asn Thr Ser Val Ile Thr Gln 195 200 205 Ala Cys Pro Lys Ile Ser Phe Glu Pro Ile Pro Ile His Tyr Cys Ala 210 215 220 Pro Ala Gly Phe Ala Ile Leu Lys Cys Asn Asp Lys Lys Phe Ser Gly 225 230 235 240 Lys Gly Ser Cys Lys Asn Val Ser Thr Val Gln Cys Thr His Gly Ile 245 250 255 Arg Pro Val Val Ser Thr Gln Leu Leu Leu Asn Gly Ser Leu Ala Glu 260 265 270 Glu Glu Val Val Ile Arg Ser Glu Asp Phe Thr Asp Asn Ala Lys Thr 275 280 285 Ile Ile Val His Leu Lys Glu Ser Val Gln Ile Asn Cys Thr Arg Pro 290 295 300 Asn Tyr Asn Lys Arg Lys Arg Ile His Ile Gly Pro Gly Arg Ala Phe 305 310 315 320 Tyr Thr Thr Lys Asn Ile Lys Gly Thr Ile Arg Gln Ala His Cys Ile 325 330 335 Ile Ser Arg Ala Lys Trp Asn Asp Thr Leu Arg Gln Ile Val Ser Lys 340 345 350 Leu Lys Glu Gln Phe Lys Asn Lys Thr Ile Val Phe Asn Pro Ser Ser 355 360 365 Gly Gly Asp Pro Glu Ile Val Met His Ser Phe Asn Cys Gly Gly Glu 370 375 380 Phe Phe Tyr Cys Asn Thr Ser Pro Leu Phe Asn Ser Ile Trp Asn Gly 385 390 395 400 Asn Asn Thr Trp Asn Asn Thr Thr Gly Ser Asn Asn Asn Ile Thr Leu 405 410 415 Gln Cys Lys Ile Lys Gln Ile Ile Asn Met Trp Gln Lys Val Gly Lys 420 425 430 Ala Met Tyr Ala Pro Pro Ile Glu Gly Gln Ile Arg Cys Ser Ser Asn 435 440 445 Ile Thr Gly Leu Leu Leu Thr Arg Asp Gly Gly Glu Asp Thr Asp Thr 450 455 460 Asn Asp Thr Glu Ile Phe Arg Pro Gly Gly Gly Asp Met Arg Asp Asn 465 470 475 480 Trp Arg Ser Glu Leu Tyr Lys Tyr Lys Val Val Thr Ile Glu Pro Leu 485 490 495 Gly Val Ala Pro Thr Lys Ala Lys Arg Arg Val Val Gln Arg Glu 500 505 510 42 2800 DNA HIV CDS (683)...(2419) 42 ttcgagctcg cccgacattg attattgact agagtcgatc gacagctgtg gaatgtgtgt 60 cagttagggt gtggaaagtc cccaggctcc ccagcaggca gaagtatgca aagcatgcat 120 ctcaattagt cagcaaccag gtgtggaaag tccccaggct ccccagcagg cagaagtatg 180 caaagcatgc atctcaatta gtcagcaacc atagtcccgc ccctaactcc gcccatcccg 240 cccctaactc cgcccagttc cgcccattct ccgccccatg gctgactaat tttttttatt 300 tatgcagagg ccgaggccgc ctcggcctct gagctattcc agaagtagtg aggaggcttt 360 tttggaggcc taggcttttg caaaaagcta gcttatccgg ccgggaacgg tgcattggaa 420 cgcggattcc ccgtgccaag agtcaggtaa gtaccgccta tagagtctat aggcccaccc 480 ccttggcttc gttagaacgc ggctacaatt aatacataac cttttggatc gatcctactg 540 acactgacat ccactttttc tttttctcca caggtgtcca ctcccaggtc caactgcacc 600 tcggttcgcg aagctagctt gggctgcatc gattgaattc cactgccttc caccaagctc 660 tgcaggatcc cagagtcagg gg tct gta tct tcc tgc tgg tgg ctc cag ttc 712 Ser Val Ser Ser Cys Trp Trp Leu Gln Phe 1 5 10 agg aac agt aaa ccc tgc tcc gaa tat tgc ctc tca cat ctc gtc aat 760 Arg Asn Ser Lys Pro Cys Ser Glu Tyr Cys Leu Ser His Leu Val Asn 15 20 25 ctc cgc gag gac tgg gga ccc tct gac aag ctt cag cgc gaa cga cca 808 Leu Arg Glu Asp Trp Gly Pro Ser Asp Lys Leu Gln Arg Glu Arg Pro 30 35 40 act acc ccg atc atc agt tat cct taa ggt ctc ttt tgt gtg gtg cgt 856 Thr Thr Pro Ile Ile Ser Tyr Pro Gly Leu Phe Cys Val Val Arg 45 50 55 tcc ggt atg ggg ggg act gcc gcc agg ttg ggg gcc gtg att ttg ttt 904 Ser Gly Met Gly Gly Thr Ala Ala Arg Leu Gly Ala Val Ile Leu Phe 60 65 70 gtc gtc ata gtg ggc ctc cat ggg gtc cgc ggc aaa tat gcc ttg gcg 952 Val Val Ile Val Gly Leu His Gly Val Arg Gly Lys Tyr Ala Leu Ala 75 80 85 gat gcc tct ctc aag atg gcc gac ccc aat cga ttt cgc ggc aaa gac 1000 Asp Ala Ser Leu Lys Met Ala Asp Pro Asn Arg Phe Arg Gly Lys Asp 90 95 100 105 ctt ccg gtc ctg gac cag ctg ctc gag gta cct gtg tgg aaa gaa gca 1048 Leu Pro Val Leu Asp Gln Leu Leu Glu Val Pro Val Trp Lys Glu Ala 110 115 120 aac acc act cta ttt tgt gca tca gat gct aaa gca tat aag aca gag 1096 Asn Thr Thr Leu Phe Cys Ala Ser Asp Ala Lys Ala Tyr Lys Thr Glu 125 130 135 gca cat aat gtt tgg gcc aca cat gcc tgt gta ccc aca gac ccc aaa 1144 Ala His Asn Val Trp Ala Thr His Ala Cys Val Pro Thr Asp Pro Lys 140 145 150 cca caa gaa ata aaa ttg gaa aat gtg aca gaa aat ttt aac atg tgg 1192 Pro Gln Glu Ile Lys Leu Glu Asn Val Thr Glu Asn Phe Asn Met Trp 155 160 165 aaa aat aac atg gta gaa cag atg cat gag gat ata atc agt tta tgg 1240 Lys Asn Asn Met Val Glu Gln Met His Glu Asp Ile Ile Ser Leu Trp 170 175 180 185 gat caa agc cta aag cca tgt gta aaa tta acc cca ctc tgt gtt act 1288 Asp Gln Ser Leu Lys Pro Cys Val Lys Leu Thr Pro Leu Cys Val Thr 190 195 200 tta aat tgc act gat ttg agg aat aat act aat acc aat agt acc tac 1336 Leu Asn Cys Thr Asp Leu Arg Asn Asn Thr Asn Thr Asn Ser Thr Tyr 205 210 215 gga aaa ata atg gag gga gga gag ata aaa aac tgc tct ttc aat atc 1384 Gly Lys Ile Met Glu Gly Gly Glu Ile Lys Asn Cys Ser Phe Asn Ile 220 225 230 acc aca agc ata aaa gat aag ctg aaa gat atg tca ctt ttt tat aaa 1432 Thr Thr Ser Ile Lys Asp Lys Leu Lys Asp Met Ser Leu Phe Tyr Lys 235 240 245 ctt gat gta gta cca ata ggt aat aat agt aat act act agt tat agg 1480 Leu Asp Val Val Pro Ile Gly Asn Asn Ser Asn Thr Thr Ser Tyr Arg 250 255 260 265 ttg ata agt tgt aac acc tca gtc att aca caa gcc tgt cca aag aca 1528 Leu Ile Ser Cys Asn Thr Ser Val Ile Thr Gln Ala Cys Pro Lys Thr 270 275 280 tcc ttt gag cca att ccc ata cat tat tgt gcc ccg gct ggt ttt gcg 1576 Ser Phe Glu Pro Ile Pro Ile His Tyr Cys Ala Pro Ala Gly Phe Ala 285 290 295 att ctc aag tgt aat gat aat aag ttc aat gga aca gga cca tgt cca 1624 Ile Leu Lys Cys Asn Asp Asn Lys Phe Asn Gly Thr Gly Pro Cys Pro 300 305 310 aat gtc agc aca gta caa tgt aca cat gga att agg cca gta gta tca 1672 Asn Val Ser Thr Val Gln Cys Thr His Gly Ile Arg Pro Val Val Ser 315 320 325 act caa ctg ctg tta aat ggc agt cta gca gaa aaa gag gta gtc ctt 1720 Thr Gln Leu Leu Leu Asn Gly Ser Leu Ala Glu Lys Glu Val Val Leu 330 335 340 345 aga tct gaa aat ttc acg gac aat gct aaa acc ata ata gta cag ctg 1768 Arg Ser Glu Asn Phe Thr Asp Asn Ala Lys Thr Ile Ile Val Gln Leu 350 355 360 aac gaa tct gta ata att gat tgt atg aga ccc aac aac aat aca aga 1816 Asn Glu Ser Val Ile Ile Asp Cys Met Arg Pro Asn Asn Asn Thr Arg 365 370 375 aca agt ata cct atg gga cca ggg aaa gca ttt tat gca aca gga gat 1864 Thr Ser Ile Pro Met Gly Pro Gly Lys Ala Phe Tyr Ala Thr Gly Asp 380 385 390 gta ata gga gat ata aga cga gca cat tgt aac att agt aga gca gga 1912 Val Ile Gly Asp Ile Arg Arg Ala His Cys Asn Ile Ser Arg Ala Gly 395 400 405 tgg aat acc act tta caa cag ata gct aaa aaa tta aga gaa aaa ttt 1960 Trp Asn Thr Thr Leu Gln Gln Ile Ala Lys Lys Leu Arg Glu Lys Phe 410 415 420 425 gag aac aaa aca ata gtt ttt aat cac tcc tca gga ggg gac cca gaa 2008 Glu Asn Lys Thr Ile Val Phe Asn His Ser Ser Gly Gly Asp Pro Glu 430 435 440 att gta atg cac act ttt aat tgt gga ggg gaa ttt ttc tgc tgt aat 2056 Ile Val Met His Thr Phe Asn Cys Gly Gly Glu Phe Phe Cys Cys Asn 445 450 455 tca aca cca ctg ttt aat agt act tgg aat gat gca caa ctg ttt aat 2104 Ser Thr Pro Leu Phe Asn Ser Thr Trp Asn Asp Ala Gln Leu Phe Asn 460 465 470 agt act tgg gat gat act aaa tgg tca aaa ggc act aac gaa aat gac 2152 Ser Thr Trp Asp Asp Thr Lys Trp Ser Lys Gly Thr Asn Glu Asn Asp 475 480 485 aca atc acc ctc cat tgc aga ata aaa caa att ata aat atg tgg cag 2200 Thr Ile Thr Leu His Cys Arg Ile Lys Gln Ile Ile Asn Met Trp Gln 490 495 500 505 gaa gta gga aaa gca atg tat gcc cct ccc atc aaa gga caa att aga 2248 Glu Val Gly Lys Ala Met Tyr Ala Pro Pro Ile Lys Gly Gln Ile Arg 510 515 520 tgt gaa tca aat att aca ggg ctg cta tta aca aga gat ggt ggt aac 2296 Cys Glu Ser Asn Ile Thr Gly Leu Leu Leu Thr Arg Asp Gly Gly Asn 525 530 535 gac acg agc aag aat aac act gag att ttc aga cct gga gga gga aat 2344 Asp Thr Ser Lys Asn Asn Thr Glu Ile Phe Arg Pro Gly Gly Gly Asn 540 545 550 atg aag gac aat tgg aga agt gaa tta tat aaa tat aaa gta ata aaa 2392 Met Lys Asp Asn Trp Arg Ser Glu Leu Tyr Lys Tyr Lys Val Ile Lys 555 560 565 att gaa cca tta gga gta gca ccc atc taggcaaaga gaagagtggt 2439 Ile Glu Pro Leu Gly Val Ala Pro Ile 570 575 gcagagagaa aaaagagcag tgacactagg agctatgttc cttgggttct tgggagcagc 2499 aggaagcact atgggcgata agctttaatg cggtagttta tcacagttaa attcgtaacg 2559 cagtcaggca ccgtgtatga aatctaacaa tgcgacctgc agaagcttag aaccgaggaa 2619 cttgtttatt gcagcttata atggttacaa ataaagcaat agcatcacaa atttcacaaa 2679 taaagcattt ttttcactgc attctagttg tggtttgtcc aaactcatca atgtatctta 2739 tcatgtctgg atcgggaatt aattcggcgc agcaccatgg cctgaaataa cctctgaaag 2799 a 2800 43 50 PRT HIV 43 Ser Val Ser Ser Cys Trp Trp Leu Gln Phe Arg Asn Ser Lys Pro Cys 1 5 10 15 Ser Glu Tyr Cys Leu Ser His Leu Val Asn Leu Arg Glu Asp Trp Gly 20 25 30 Pro Cys Asp Lys Leu Gln Arg Glu Arg Pro Thr Thr Pro Ile Ile Ser 35 40 45 Tyr Pro 50 44 528 PRT HIV 44 Gly Leu Phe Cys Val Val Arg Ser Gly Met Gly Gly Thr Ala Ala Arg 1 5 10 15 Leu Gly Ala Val Ile Leu Phe Val Val Ile Val Gly Leu His Gly Val 20 25 30 Arg Gly Lys Tyr Ala Leu Ala Asp Ala Ser Leu Lys Met Ala Asp Pro 35 40 45 Asn Arg Phe Arg Gly Lys Asp Leu Pro Val Leu Asp Gln Leu Leu Glu 50 55 60 Val Pro Val Trp Lys Glu Ala Asn Thr Thr Leu Phe Cys Ala Ser Asp 65 70 75 80 Ala Lys Ala Tyr Lys Thr Glu Ala His Asn Val Trp Ala Thr His Ala 85 90 95 Cys Val Pro Thr Asp Pro Lys Pro Gln Glu Ile Lys Leu Glu Asn Val 100 105 110 Thr Glu Asn Phe Asn Met Trp Lys Asn Asn Met Val Glu Gln Met His 115 120 125 Glu Asp Ile Ile Ser Leu Trp Asp Gln Ser Leu Lys Pro Cys Val Lys 130 135 140 Leu Thr Pro Leu Cys Val Thr Leu Asn Cys Thr Asp Leu Arg Asn Asn 145 150 155 160 Thr Asn Thr Asn Ser Thr Tyr Gly Lys Ile Met Glu Gly Gly Glu Ile 165 170 175 Lys Asn Cys Ser Phe Asn Ile Thr Thr Ser Ile Lys Asp Lys Leu Lys 180 185 190 Asp Met Ser Leu Phe Tyr Lys Leu Asp Val Val Pro Ile Gly Asn Asn 195 200 205 Ser Asn Thr Thr Ser Tyr Arg Leu Ile Ser Cys Asn Thr Ser Val Ile 210 215 220 Thr Gln Ala Cys Pro Lys Thr Ser Phe Glu Pro Ile Pro Ile His Tyr 225 230 235 240 Cys Ala Pro Ala Gly Phe Ala Ile Leu Lys Cys Asn Asp Asn Lys Phe 245 250 255 Asn Gly Thr Gly Pro Cys Pro Asn Val Ser Thr Val Gln Cys Thr His 260 265 270 Gly Ile Arg Pro Val Val Ser Thr Gln Leu Leu Leu Asn Gly Ser Leu 275 280 285 Ala Glu Lys Glu Val Val Leu Arg Ser Glu Asn Phe Thr Asp Asn Ala 290 295 300 Lys Thr Ile Ile Val Gln Leu Asn Glu Ser Val Ile Ile Asp Cys Met 305 310 315 320 Arg Pro Asn Asn Asn Thr Arg Thr Ser Ile Pro Met Gly Pro Gly Lys 325 330 335 Ala Phe Tyr Ala Thr Gly Asp Val Ile Gly Asp Ile Arg Arg Ala His 340 345 350 Cys Asn Ile Ser Arg Ala Gly Trp Asn Thr Thr Leu Gln Gln Ile Ala 355 360 365 Lys Lys Leu Arg Glu Lys Phe Glu Asn Lys Thr Ile Val Phe Asn His 370 375 380 Ser Ser Gly Gly Asp Pro Glu Ile Val Met His Thr Phe Asn Cys Gly 385 390 395 400 Gly Glu Phe Phe Cys Cys Asn Ser Thr Pro Leu Phe Asn Ser Thr Trp 405 410 415 Asn Asp Ala Gln Leu Phe Asn Ser Thr Trp Asp Asp Thr Lys Trp Ser 420 425 430 Lys Gly Thr Asn Glu Asn Asp Thr Ile Thr Leu His Cys Arg Ile Lys 435 440 445 Gln Ile Ile Asn Met Trp Gln Glu Val Gly Lys Ala Met Tyr Ala Pro 450 455 460 Pro Ile Lys Gly Gln Ile Arg Cys Glu Ser Asn Ile Thr Gly Leu Leu 465 470 475 480 Leu Thr Arg Asp Gly Gly Asn Asp Thr Ser Lys Asn Asn Thr Glu Ile 485 490 495 Phe Arg Pro Gly Gly Gly Asn Met Lys Asp Asn Trp Arg Ser Glu Leu 500 505 510 Tyr Lys Tyr Lys Val Ile Lys Ile Glu Pro Leu Gly Val Ala Pro Ile 515 520 525 45 1533 DNA HIV CDS (166)...(1533) 45 atggggggga ctgccgccag gttgggggcc gtgattttgt ttgtcgtcat agtgggcctc 60 catggggtcc gcggcaaata tgccttggcg gatgcctctc tcaagatggc cgaccccaat 120 cgatttcgcg gcaaagacct tccggtcctg gaccagctgc tcgag gta cct gtg tgg 177 Val Pro Val Trp 1 aaa gaa gca acc acc act cta ttt tgt gca tca gat gct aaa gca tat 225 Lys Glu Ala Thr Thr Thr Leu Phe Cys Ala Ser Asp Ala Lys Ala Tyr 5 10 15 20 gat aca gag gta cat aat gtt tgg gcc aca cat gcc tgt gta ccc aca 273 Asp Thr Glu Val His Asn Val Trp Ala Thr His Ala Cys Val Pro Thr 25 30 35 gac ccc aac cca caa gaa ata gga ttg gaa aat gta aca gaa aat ttt 321 Asp Pro Asn Pro Gln Glu Ile Gly Leu Glu Asn Val Thr Glu Asn Phe 40 45 50 aac atg tgg aaa aat aac atg gta gaa cag atg cat gag gat ata atc 369 Asn Met Trp Lys Asn Asn Met Val Glu Gln Met His Glu Asp Ile Ile 55 60 65 agt tta tgg gat caa agc tta aag cca tgt gta aaa tta acc cca cta 417 Ser Leu Trp Asp Gln Ser Leu Lys Pro Cys Val Lys Leu Thr Pro Leu 70 75 80 tgt gtt act tta aat tgc act gat ttg aaa aat gct act aat acc act 465 Cys Val Thr Leu Asn Cys Thr Asp Leu Lys Asn Ala Thr Asn Thr Thr 85 90 95 100 agt agc agc tgg gga aag atg gag aga gga gaa ata aaa aac tgc tct 513 Ser Ser Ser Trp Gly Lys Met Glu Arg Gly Glu Ile Lys Asn Cys Ser 105 110 115 ttc aat gtc acc aca agt ata aga gat aag atg aag aat gaa tat gca 561 Phe Asn Val Thr Thr Ser Ile Arg Asp Lys Met Lys Asn Glu Tyr Ala 120 125 130 ctt ttt tat aaa ctt gat gta gta cca ata gat aat gat aat act agc 609 Leu Phe Tyr Lys Leu Asp Val Val Pro Ile Asp Asn Asp Asn Thr Ser 135 140 145 tat agg ttg ata agt tgt aac acc tca gtc att aca cag gcc tgt cca 657 Tyr Arg Leu Ile Ser Cys Asn Thr Ser Val Ile Thr Gln Ala Cys Pro 150 155 160 aag gtg tcc ttt gag cca att ccc ata cat tat tgt gcc ccg gct ggt 705 Lys Val Ser Phe Glu Pro Ile Pro Ile His Tyr Cys Ala Pro Ala Gly 165 170 175 180 ttt gcg att cta aag tgt aga gat aaa aag ttc aac gga aca gga cca 753 Phe Ala Ile Leu Lys Cys Arg Asp Lys Lys Phe Asn Gly Thr Gly Pro 185 190 195 tgt aca aat gtc agc aca gta caa tgt aca cat gga att agg cca gta 801 Cys Thr Asn Val Ser Thr Val Gln Cys Thr His Gly Ile Arg Pro Val 200 205 210 gta tca act caa ctg ctg tta aat ggc agt tta gca gaa gaa gaa gta 849 Val Ser Thr Gln Leu Leu Leu Asn Gly Ser Leu Ala Glu Glu Glu Val 215 220 225 gta att aga tct gcc aat ttc tcg gac aat gct aaa acc ata ata gta 897 Val Ile Arg Ser Ala Asn Phe Ser Asp Asn Ala Lys Thr Ile Ile Val 230 235 240 cag ctg aac gaa tct gta gaa att aat tgt aca aga ccc aac aac aat 945 Gln Leu Asn Glu Ser Val Glu Ile Asn Cys Thr Arg Pro Asn Asn Asn 245 250 255 260 aca aga aga agt ata cat ata gga cca ggg aga gca ttt tat gca aca 993 Thr Arg Arg Ser Ile His Ile Gly Pro Gly Arg Ala Phe Tyr Ala Thr 265 270 275 gga gaa ata ata gga gac ata aga caa gca cat tgt aac ctt agt agc 1041 Gly Glu Ile Ile Gly Asp Ile Arg Gln Ala His Cys Asn Leu Ser Ser 280 285 290 aca aaa tgg aat aat act tta aaa cag ata gtt aca aaa tta aga gaa 1089 Thr Lys Trp Asn Asn Thr Leu Lys Gln Ile Val Thr Lys Leu Arg Glu 295 300 305 cat ttt aat aaa aca ata gtc ttt aat cac tcc tca gga ggg gac cca 1137 His Phe Asn Lys Thr Ile Val Phe Asn His Ser Ser Gly Gly Asp Pro 310 315 320 gaa att gta atg cac agt ttt aat tgt gga ggg gaa ttt ttc tac tgt 1185 Glu Ile Val Met His Ser Phe Asn Cys Gly Gly Glu Phe Phe Tyr Cys 325 330 335 340 aat aca aca cca ctg ttt aat agt act tgg aat tat act tat act tgg 1233 Asn Thr Thr Pro Leu Phe Asn Ser Thr Trp Asn Tyr Thr Tyr Thr Trp 345 350 355 aat aat act gaa ggg tca aat gac act gga aga aat atc aca ctc caa 1281 Asn Asn Thr Glu Gly Ser Asn Asp Thr Gly Arg Asn Ile Thr Leu Gln 360 365 370 tgc aga ata aaa caa att ata aac atg tgg cag gaa gta gga aaa gca 1329 Cys Arg Ile Lys Gln Ile Ile Asn Met Trp Gln Glu Val Gly Lys Ala 375 380 385 atg tat gcc cct ccc ata aga gga caa att aga tgc tca tca aat att 1377 Met Tyr Ala Pro Pro Ile Arg Gly Gln Ile Arg Cys Ser Ser Asn Ile 390 395 400 aca ggg ctg cta tta aca aga gat ggt ggt aat aac agc gaa acc gag 1425 Thr Gly Leu Leu Leu Thr Arg Asp Gly Gly Asn Asn Ser Glu Thr Glu 405 410 415 420 atc ttc aga cct gga gga gga gat atg agg gac aat tgg aga agt gaa 1473 Ile Phe Arg Pro Gly Gly Gly Asp Met Arg Asp Asn Trp Arg Ser Glu 425 430 435 tta tat aaa tat aaa gta gta aaa att gaa cca tta gga gta gca ccc 1521 Leu Tyr Lys Tyr Lys Val Val Lys Ile Glu Pro Leu Gly Val Ala Pro 440 445 450 acc aag gca taa 1533 Thr Lys Ala * 455 46 455 PRT HIV 46 Val Pro Val Trp Lys Glu Ala Thr Thr Thr Leu Phe Cys Ala Ser Asp 1 5 10 15 Ala Lys Ala Tyr Asp Thr Glu Val His Asn Val Trp Ala Thr His Ala 20 25 30 Cys Val Pro Thr Asp Pro Asn Pro Gln Glu Ile Gly Leu Glu Asn Val 35 40 45 Thr Glu Asn Phe Asn Met Trp Lys Asn Asn Met Val Glu Gln Met His 50 55 60 Glu Asp Ile Ile Ser Leu Trp Asp Gln Ser Leu Lys Pro Cys Val Lys 65 70 75 80 Leu Thr Pro Leu Cys Val Thr Leu Asn Cys Thr Asp Leu Lys Asn Ala 85 90 95 Thr Asn Thr Thr Ser Ser Ser Trp Gly Lys Met Glu Arg Gly Glu Ile 100 105 110 Lys Asn Cys Ser Phe Asn Val Thr Thr Ser Ile Arg Asp Lys Met Lys 115 120 125 Asn Glu Tyr Ala Leu Phe Tyr Lys Leu Asp Val Val Pro Ile Asp Asn 130 135 140 Asp Asn Thr Ser Tyr Arg Leu Ile Ser Cys Asn Thr Ser Val Ile Thr 145 150 155 160 Gln Ala Cys Pro Lys Val Ser Phe Glu Pro Ile Pro Ile His Tyr Cys 165 170 175 Ala Pro Ala Gly Phe Ala Ile Leu Lys Cys Arg Asp Lys Lys Phe Asn 180 185 190 Gly Thr Gly Pro Cys Thr Asn Val Ser Thr Val Gln Cys Thr His Gly 195 200 205 Ile Arg Pro Val Val Ser Thr Gln Leu Leu Leu Asn Gly Ser Leu Ala 210 215 220 Glu Glu Glu Val Val Ile Arg Ser Ala Asn Phe Ser Asp Asn Ala Lys 225 230 235 240 Thr Ile Ile Val Gln Leu Asn Glu Ser Val Glu Ile Asn Cys Thr Arg 245 250 255 Pro Asn Asn Asn Thr Arg Arg Ser Ile His Ile Gly Pro Gly Arg Ala 260 265 270 Phe Tyr Ala Thr Gly Glu Ile Ile Gly Asp Ile Arg Gln Ala His Cys 275 280 285 Asn Leu Ser Ser Thr Lys Trp Asn Asn Thr Leu Lys Gln Ile Val Thr 290 295 300 Lys Leu Arg Glu His Phe Asn Lys Thr Ile Val Phe Asn His Ser Ser 305 310 315 320 Gly Gly Asp Pro Glu Ile Val Met His Ser Phe Asn Cys Gly Gly Glu 325 330 335 Phe Phe Tyr Cys Asn Thr Thr Pro Leu Phe Asn Ser Thr Trp Asn Tyr 340 345 350 Thr Tyr Thr Trp Asn Asn Thr Glu Gly Ser Asn Asp Thr Gly Arg Asn 355 360 365 Ile Thr Leu Gln Cys Arg Ile Lys Gln Ile Ile Asn Met Trp Gln Glu 370 375 380 Val Gly Lys Ala Met Tyr Ala Pro Pro Ile Arg Gly Gln Ile Arg Cys 385 390 395 400 Ser Ser Asn Ile Thr Gly Leu Leu Leu Thr Arg Asp Gly Gly Asn Asn 405 410 415 Ser Glu Thr Glu Ile Phe Arg Pro Gly Gly Gly Asp Met Arg Asp Asn 420 425 430 Trp Arg Ser Glu Leu Tyr Lys Tyr Lys Val Val Lys Ile Glu Pro Leu 435 440 445 Gly Val Ala Pro Thr Lys Ala 450 455 47 37 DNA Artificial Sequence Primer 47 gggaattcgg atccagagca gaagacagtg gcaatga 37 48 33 DNA Artificial Sequence Primer 48 ctcgagctcc tgaagacagt cagactcatc aag 33 49 39 DNA Artificial Sequence Primer 49 ggtctagaag ctttagccca tagtgcttcc tgctgctcc 39 50 36 DNA Artificial Sequence Primer 50 gggcggatcc tcgaggtacc tgtrtggaaa gaagca 36 51 38 DNA Artificial Sequence Primer 51 ggtctagaag ctttatgctc cyaagaaccc aaggaaca 38 52 7 PRT HIV 52 Ile Gly Pro Gly Arg Ala Phe 1 5 53 7 PRT HIV 53 Ile Gly Pro Gly Arg Ala Trp 1 5 54 7 PRT HIV 54 Leu Gly Pro Gly Ser Thr Phe 1 5 55 7 PRT HIV 55 Ile Gly Pro Gly Arg Val Leu 1 5 56 7 PRT HIV 56 Ile Gly Pro Gly Ser Ala Phe 1 5 57 5 PRT HIV 57 Ile Gly Pro Gly Arg 1 5 

What is claimed is:
 1. An isolated polypeptide comprising an HIV gp120 amino acid sequence selected from the group consisting of Sequence ID Nos. 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22, 24, 26, and 28, and fragments thereof.
 2. The polypeptide of claim 1 wherein the polypeptide additionally comprises a flag epitope sequence.
 3. The polypeptide of claim 2 wherein the flag epitope sequence is HSV gD-1 flag epitope sequence.
 4. The polypeptide of claim 2 wherein the flag epitope sequence is fused to the HIV gp120 amino acid sequence.
 5. An oligonucleotide of not more than five kilobases encoding an HIV gp120 polypeptide sequence comprising an amino acid sequence selected from the group consisting of Sequence ID Nos. 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22, 24, 26, and 28, and fragments thereof.
 6. The oligonucleotide of claim 5 wherein the oligonucleotide includes a nucleotide sequence selected from the group consisting of Sequence ID Nos. 1, 3, 5, 7, 9, 11, 13, 15, 7, 19, 21, 23, 25, and 27, and fragments thereof.
 7. The oligonucleotide of claim 5 wherein the amino acid sequence encoded by the oligonucleotide additionally comprises a flag epitope.
 8. The oligonucleotide of claim 5 wherein the flag epitope is HSV gD-1 flag epitope.
 9. The oligonucleotide of claim 7 wherein the flag epitope is fused to the HIV gp120 amino acid sequence.
 10. A vaccine comprising gp120 MN and an HIV gp120 polypeptide sequence selected from the group consisting of Sequence ID Nos. 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22, 24, 26, and 28, and fragments thereof in a suitable carrier.
 11. A vaccine comprising: a. a first gp120 polypeptide sequence or a fragment thereof; and b. a breakthrough isolate HIV gp120 polypeptide sequence or a fragment thereof from a vaccinee vaccinated with said first HIV gp120 polypeptide sequence; wherein said HIV gp120 polypeptide sequences are in a suitable carrier.
 12. The vaccine of claim 11 wherein said first HIV gp120 polypeptide sequence comprises gp120 MN, gp120 A244, gp120 MN-GNE6 (Sequence ID No. 31), or gp120 MN-GNE8 (Sequence ID No. 33).
 13. The vaccine of claim 12 wherein said vaccine additionally comprises a second gp120 polypeptide sequence comprising gp120 MN, gp120 A244, gp120 MN-GNE6 (Sequence ID No. 31), or gp120 MN-GNE8 (Sequence ID No. 33), or a fragment thereof, wherein said second HIV gp120 polypeptide sequence is different from said first HIV gp120 polypeptide sequence.
 14. The vaccine of claim 13 wherein said first gp120 polypeptide sequence comprises gp120 MN and said second gp120 polypeptide sequence comprises gp120 A244.
 15. The vaccine of claim 14 wherein said breakthrough isolate comprises an HIV gp120 polypeptide sequence selected from the group consisting of Sequence ID Nos. 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22, 24, 26, and 28, and fragments thereof in a suitable carrier.
 16. The vaccine of claim 13 wherein said first gp120 polypeptide sequence comprises gp120 MN and said second gp120 polypeptide sequence comprises gp120 MN-GNE8 (Sequence ID No. 33).
 17. The vaccine of claim 16 wherein said breakthrough isolate HIV gp120 polypeptide sequence is an HIV gp120 polypeptide sequence selected from the group consisting of Sequence ID Nos. 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22, 24, 26, and 28, and fragments thereof, in a suitable carrier.
 18. The vaccine of claim 13 wherein said breakthrough isolate HIV gp120 polypeptide is from a vaccinee vaccinated with said first and second HIV gp120 polypeptide sequences.
 19. A method for making an HIV vaccine comprising adding an HIV gp120 polypeptide sequence or fragments thereof from a breakthrough isolate from a vaccinee to the vaccine with which the vaccinee was vaccinated.
 20. The vaccine of claim 11 wherein said first gp120 polypeptide sequence is from a macrophage-tropic HIV-1 strain.
 21. The vaccine of claim 11 wherein said first gp120 polypeptide sequence is from a T-cell-tropic HIV-1 strain.
 22. The vaccine of claim 21 wherein said vaccine additionally comprises a second gp120 polypeptide sequence or a fragment, from a macrophage-tropic HIV-1 strain.
 23. The vaccine of claim 22 wherein said first and second gp120 polypeptide sequences bind to different chemokine receptors.
 24. The vaccine of claim 23 wherein said first gp120 polypeptide sequence binds to CC-CKR-5 and said second gp120 polypeptide sequence binds to CXC-CKR-4.
 25. The vaccine of claim 11 wherein said vaccine additionally comprises an virus engineered to induce a cytotoxic T-cell response. 